Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq830 172 1e-37 seq429 159 8e-34 seq1314 120 7e-22 >seq830 Length=194395 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || || || || |||||||| || ||||| || ||||| | | |||||| ||||| Sbjct 122856 AACACTAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCCGACAAAGTTCTACCATCC 122915 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | |||||||| || || || | ||||| |||||||||||||| |||||||||||| Sbjct 122916 TCCAATTGCTTACCCGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT 122975 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| ||| ||||||||||| |||||||| ||||| || | || | ||| Sbjct 122976 TGAATTTTAGCCTTTACGTTCTCAATTGTGTCCGATGGCTCCACCTCCAAAGTGATAGTC 123035 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| ||||||||||| ||||| | |||||| Sbjct 123036 TTTCCCGTCAAAGTTTTCACGAAAATCTGCATT 123068 Score = 163 bits (180), Expect = 6e-35 Identities = 166/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCTCCCAT 194986 |||||| | || | || || || ||||| ||||||||||| | |||| || || |||| Sbjct 123083 CAAAACCAAATGTAATGTAGATTCCTTTTGGATATTGTAATCAGACAAG-GTCCTGCCAT 123141 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 | || | ||| |||||||||||||| | ||||| || ||||||||||| ||||| |||| Sbjct 123142 CCTCCAACTGTTTACCTGCGAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTGT 123201 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106 |||||||||| ||| ||||||||||| || || || ||| ||||| | ||| | | Sbjct 123202 CTTGAATTTTGGCCTTAACGTTCTCAATTGTATCGGATGGTTCAACTTCTAAGGTGATGG 123261 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| |||||||| || | |||||| Sbjct 123262 TTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 123295 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| || || || || || ||||| |||| ||||| || |||||||| | || Sbjct 124251 TGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCTTCCAATTGT 124310 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| | ||||| || ||||||||||| ||||| |||||||| ||||| Sbjct 124311 TTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTTG 124370 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||| ||||| ||||| || ||| ||||| | ||||| || ||||| ||| Sbjct 124371 GCCTTTACGTTTTCAATTGTGTCAGATGGTTCAACTTCCAAGGTAATAGTTTTTCCAGTC 124430 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| | ||||| Sbjct 124431 AAGGTTTTAACGAAGATCTGCAT 124453 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || |||||||| || || || ||||||||||| | ||||| || |||||||| | || Sbjct 123549 TGGAGAGTGGATTCCTTCTGGATATTGTAATCAGACAGAGTCCTGCCATCTTCCAATTGT 123608 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| |||||||| | ||||| || ||||| || || ||||| |||||||| ||||| Sbjct 123609 TTACCGGCGAAGATTAAACGTTGCTGATCTGGGGGGATTCCTTCCTTGTCTTGGATTTTA 123668 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| ||||| || || || ||| ||||| | || | || ||||| ||| Sbjct 123669 GCCTTGACGTTTTCAATTGTATCGGATGGTTCAACTTCCAAAGTGATAGTTTTTCCAGTC 123728 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| | ||||| Sbjct 123729 AAGGTTTTAACGAAGATCTGCAT 123751 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 ||||| | |||||| || || || || || || ||||| || | |||||||| |||||| Sbjct 122628 AAAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTGCCATCT 122687 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||||| || || || || | || || || ||||| ||||| ||||| || || Sbjct 122688 TCCAATTGCTTGCCAGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCTTCCTTATCC 122747 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || ||||| || |||||||| || || || || |||||| || | || | ||| Sbjct 122748 TGGATTTTGGCTTTAACGTTCTCGATTGTATCAGACGGTTCCACCTCCAAAGTGATAGTC 122807 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||||||||||||||| | ||||| Sbjct 122808 TTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 122839 Score = 125 bits (138), Expect = 2e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 194959 ATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT 195018 ||||||||||| | ||||| || |||||||| | || || || |||||||| | ||| Sbjct 123816 ATATTGTAATCAGACAGAGTCCTGCCATCTTCCAATTGTTTTCCGGCGAAGATTAAACGT 123875 Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 || || ||||| || || ||||| |||||||| ||||| ||| ||||||||||| || Sbjct 123876 TGCTGATCTGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACGTTCTCAATTGTA 123935 Query 195079 TCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGC 195138 || || ||| ||||| | || | || ||||| ||||| ||||| ||||| | ||| Sbjct 123936 TCGGATGGTTCAACTTCTAAAGTGATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTGC 123995 Query 195139 AT 195140 || Sbjct 123996 AT 123997 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| | || |||||||| || || || || ||||| || | ||||| || ||||| Sbjct 123311 CAAAACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTCCTGCCATC 123370 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||| ||||| || || || | ||||| || ||||| || || ||||| ||||| Sbjct 123371 TTCCAACTGTTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGGATCCCTTCCTTGTC 123430 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || |||||| || ||||| ||||| ||| || || || | || | || Sbjct 123431 TTGAATCTTAGCCTTGACATTTTCAATAGTGTCAGAAGGCTCAACCTCCAAAGTGATGGT 123490 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || ||||| || || | ||||| Sbjct 123491 TTTACCAGTTAAGGTTTTCACAAAAATCTGCAT 123523 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || || ||||| || ||||| || | ||||| || |||||||| | || Sbjct 124707 TGAAGTGTAGATTCCTTTTGGATGTTGTAGTCCGACAGAGTCCTGCCATCTTCCAATTGT 124766 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| |||||||| | ||||| || || || || || || |||||||||||||| || Sbjct 124767 TTACCAGCGAAGATCAAACGTTGCTGATCAGGTGGGATTCCCTCTTTGTCTTGAATCTTA 124826 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || |||||||| || || || || || | || | || || || || Sbjct 124827 GCCTTCACATTTTCAATGGTATCAGAGGGCTCAACCTCCAAAGTGATGGTTTTACCAGTT 124886 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || | ||||| Sbjct 124887 AAGGTTTTCACAAAGATCTGCAT 124909 >seq429 Length=41586 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | |||||| || || || || ||||| || | ||||| | ||||| ||||| || Sbjct 1133 GTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTACGTCCATCCTCGAGTTG 1192 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||||||||| ||||| || ||||| ||||| || || |||||||| || || Sbjct 1193 CTTACCGGCGAAGATAAGACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTT 1252 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||| ||||| || ||| || || |||||||| | ||||| || || Sbjct 1253 GGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGT 1312 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 ||||||||||||||| | ||||||| Sbjct 1313 CAAAGTTTTTACGAAAATCTGCATTT 1338 >seq1314 Length=49468 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||| || || ||||| || || || ||||| |||| || || | Sbjct 22016 GAGACGCAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 22075 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| |||||||||||||| |||||||| | ||||| || ||||| || || || || Sbjct 22076 TCCATCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGGATTCCCTC 22135 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||| || || || ||| || || || || || || || || || || ||||| Sbjct 22136 TTTGTCCTGGATCTTGGCCTTCACATTTTCGATAGTATCGGAGGGCTCGACCTCGAGGGT 22195 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| ||||| | |||||| Sbjct 22196 GATGGTCTTACCCGTTAGGGTTTTCACGAAAATTTGCAT 22234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109415499166550