Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq429 95.1 8e-15 seq830 89.7 3e-13 >seq429 Length=41586 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||| |||||||| || | ||| |||| || Sbjct 1128 ACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTACGTCCATCCTCG 1187 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || ||||| || || || |||||||| ||| | || | ||||||||||| Sbjct 1188 AGTTGCTTACCGGCGAAGATAAGACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 1247 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || | ||| || || | ||| ||||| | Sbjct 1248 ATCTTGGCCTTCAC--ATTCTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTCT 1305 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 | ||||| | ||| || || || |||||||| ||| Sbjct 1306 TACCCGTCAAAGTTTTTACGAAAATCTGCATTTTC 1340 >seq830 Length=194395 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| ||||| |||| ||| ||| || |||||||| |||||||| || | | |||| Sbjct 124469 CAATACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAGTCCGACAGAGTCCTGCCATC 124528 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| || || || || || || | ||||| || ||| | || | || |||||||| Sbjct 124529 TTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTGTC 124588 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 || || |||||| | | || | ||| | ||||| || | ||| ||||| Sbjct 124589 TTGGATTTTGGCTTTGACATTTTCAATTGTGTCAGATGGTTCAACTTCCAAGGTAATGGT 124648 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||| || | || || ||||||||||||||| Sbjct 124649 TTTTCCAGTCAAGGTTTTAACAAAGATCTGCATA 124682 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| || || |||| ||| ||| || || ||||| |||||||| || | | |||| Sbjct 124697 CAATACTAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCCGACAGAGTCCTGCCATC 124756 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| ||||| || || || || | |||||||| || | || | ||||| ||||| Sbjct 124757 TTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGTGGGATTCCCTCTTTGTC 124816 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| || || | | || | ||| || |||||| || | || ||||| Sbjct 124817 TTGAATCTTAGCCTTCACATTTTCAATGGTATCAGAGGGCTCAACCTCCAAAGTGATGGT 124876 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || | || ||||||||||||||||| Sbjct 124877 TTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 124909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324615202405200