Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq809 122 7e-22 seq830 118 9e-21 seq3455 111 1e-18 seq4008 102 7e-16 seq4643 95.1 1e-13 >seq809 Length=60095 Score = 122 bits (134), Expect = 7e-22 Identities = 248/366 (68%), Gaps = 2/366 (1%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || |||||||||||||| ||||| || || || | |||| ||| ||| | ||| | Sbjct 7531 AACCCAGATGAGGCTGTCGCCTACGGCGCTGCCGTCCAAGGAGCCATTTTGATCGGAGAT 7472 Query 552270 ACT-GATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 || | | |||| | ||| | || | | || |||||| ||||||| ||| | ||| | Sbjct 7471 ACAAGCTCCAAAA-TCCAAGACGTTCTCTTGGTGGATGTTGCTCCTCTTTCTTTGGGTAT 7413 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 ||||| | |||||| ||||||| || | | || || || | | |||||||| || Sbjct 7412 CGAAACCGCTGGAGGAGTTATGACCAAAATCGTTGAGAGGAACTCGAGGATTCCTTGCAA 7353 Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448 | | || | || || || ||||||||| |||| ||||| || ||| | || Sbjct 7352 GCAGCAACAAACGTTCACAACTTACTCCGATAATCAATCTGCGGTTACCATCCAAGTCTT 7293 Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508 ||||| ||||| | |||||||| || || | | || || || || || || Sbjct 7292 CGAAGGCGAAAGGGCGATGACTAAAGACAACAACCTCTTGGGAACCTTCAACTTGTGCGG 7233 Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568 ||||| || || || | ||||| ||| |||| ||||||||||||||| | || || || Sbjct 7232 AATTCCGCCAGCACCGAGAGGAGTCCCGAAAATCGAAGTTACTTTCGATCTGGACGCTAA 7173 Query 552569 TGGAAT 552574 || || Sbjct 7172 CGGCAT 7167 >seq830 Length=194395 Score = 118 bits (130), Expect = 9e-21 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| | ||| | ||| || ||| ||| || || ||||| || | ||||| || Sbjct 124236 AGACGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTG 124295 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| | |||||| || ||||| || | | ||||||||| |||||||||||||| Sbjct 124296 CCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCTTCC 124355 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAG 563434 || ||||| ||||| ||||| |||||||| |||| || || || ||| | | Sbjct 124356 TTGTCTTGGATTTTGGCCTTTACGTTTTCAATTGTGTCAG-ATG-GTTCAACTTCCAAGG 124413 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| |||||| ||||| | ||||||||||| || |||||| Sbjct 124414 TAATAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCATA 124454 Score = 116 bits (128), Expect = 3e-20 Identities = 139/185 (75%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 ||||||||||||| ||||| || |||||| | |||||||||||| || || | | | Sbjct 123816 ATATTGTAATCAGACAGAGTCCTGCCATCTTCCAATTGTTTTCCGGCGAAGATTAAACGT 123875 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 |||||||| || || |||||||| || ||||| ||||| || || |||||||||| Sbjct 123876 TGCTGATCTGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACGTTCTCAATTGTA 123935 Query 563413 TCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470 || | || || || ||| | ||| | ||||| ||||| | ||||||||||| || | Sbjct 123936 TC-GGATG-GTTCAACTTCTAAAGTGATGGTTTTTCCAGTCAATGTTTTAACGAAGATCT 123993 Query 563471 GCATA 563475 ||||| Sbjct 123994 GCATA 123998 Score = 116 bits (128), Expect = 3e-20 Identities = 163/223 (73%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| | ||| | |||||||||| ||| ||||| || ||||| || | ||||| | Sbjct 124008 AGACGCAATACCAAATGAAGGGTAGATTCCTTTTGG--ATGTTGTAGTCTGACAGAGTCC 124065 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | |||||| | |||||| || || || || | | ||||||||| ||||| ||||||| Sbjct 124066 TGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTT 124125 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAG 563432 | || ||||| ||||| || || |||||||| |||| || || || ||| | Sbjct 124126 CCTTGTCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGA-TG-GTTCAACTTCCAA 124183 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||||| ||||| ||||| | ||||||||||| || |||||| Sbjct 124184 AGTAATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTGCATA 124226 Score = 114 bits (126), Expect = 1e-19 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| | ||| | ||| || || ||| || ||||||||||||| ||||| || Sbjct 123534 AGACGCAATACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGACAGAGTCCTG 123593 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| | |||||| ||||| || || | | ||||||||| || || |||||||| Sbjct 123594 CCATCTTCCAATTGTTTACCGGCGAAGATTAAACGTTGCTGATCTGGGGGGATTCCTTCC 123653 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAG 563434 || ||||| ||||| || || ||||||||||| | || || || ||| | || Sbjct 123654 TTGTCTTGGATTTTAGCCTTGACGTTTTCAATTGTATC-GGATG-GTTCAACTTCCAAAG 123711 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | | |||||| ||||| | ||||||||||| || |||||| Sbjct 123712 TGATAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCATA 123752 Score = 104 bits (114), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| | || ||||| ||||| || || ||| || ||||| | | |||||| Sbjct 122850 AGACGTAACACTAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCCGACAAAGTTCTA 122909 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || | ||| || || |||||||| | | |||||| || |||||||| |||||| Sbjct 122910 CCATCCTCCAATTGCTTACCCGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCT 122969 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || ||||||||||| ||||| ||||||||| || | || | || || | ||| Sbjct 122970 TTGTCTTGAATTTTAGCCTTTACGTTCTCAATTGTGTCCG-ATGGCTCCACCTCCAAAGT 123028 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||| || || || | |||||| |||||||| ||||| Sbjct 123029 GATAGTCTTTCCCGTCAAAGTTTTCACGAAAATCTGCAT 123067 Score = 102 bits (112), Expect = 7e-16 Identities = 151/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| |||||||| ||| || || ||||| |||| |||||||| |||||| | Sbjct 122633 CAAG-TGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTGCCATCTTCCA 122691 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 ||| || || |||||||| | | |||||||| || ||||||||||| ||||| || | Sbjct 122692 ATTGCTTGCCAGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGA 122751 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTA 563445 |||| ||| || ||| |||||||||| | | || || | ||| | ||| || Sbjct 122752 TTTTGGCTTTAACGTTCTCGATTGTATCAG-ACGGTTCCACCTCCAAAGTGATAGTCTTT 122810 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || | |||||| ||||| || |||||| Sbjct 122811 CCCGTCAAAGTTTTTACGAAGATCTGCATA 122840 Score = 98.7 bits (108), Expect = 8e-15 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| | ||| | |||||| ||| ||| ||||| || ||||| || | ||||| | Sbjct 124692 AGACGCAATACTAAATGAAGTGTAGATTCCTTTTGG--ATGTTGTAGTCCGACAGAGTCC 124749 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | |||||| | |||||| || || || || | | |||||||||||| || ||||| | Sbjct 124750 TGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGTGGGATTCCCT 124809 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 |||| |||||||| || || || ||||| ||||||| | | | || | || Sbjct 124810 CTTTGTCTTGAATCTTAGCCTTCACATTTTCAATGGTATCAGAGGGCTCAACCTCCAAAG 124869 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | ||||||||||| | ||||| || || || ||||| Sbjct 124870 TGATGGTTTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 124909 Score = 95.1 bits (104), Expect = 1e-13 Identities = 139/192 (72%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 563286 TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAAT 563345 ||||| ||||||||||||| | || || ||| || | ||||| || || || || Sbjct 123109 TTTGG--ATATTGTAATCAGACAAGGTCCTGCCATCCTCCAACTGTTTACCTGCGAAGAT 123166 Query 563346 AAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTC 563405 | | ||||||||| |||||||| ||||| || ||||||||||| || || ||| Sbjct 123167 CAAACGTTGCTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTGGCCTTAACGTTCTC 123226 Query 563406 AATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACG 563463 ||||||||| | || || || ||| | || | ||||| ||||| | ||||| || Sbjct 123227 AATTGTATC-GGATG-GTTCAACTTCTAAGGTGATGGTTTTTCCAGTCAAGGTTTTTACA 123284 Query 563464 AAAATTTGCATA 563475 |||||||||||| Sbjct 123285 AAAATTTGCATA 123296 Score = 87.8 bits (96), Expect = 1e-11 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || ||||| |||| ||||| || |||||| | ||||| ||||||||||| | | | Sbjct 123342 ATGTTGTAGTCAGACAGAGTCCTGCCATCTTCCAACTGTTTACCGGCAAAAATCAAACGT 123401 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 |||||||| || || || ||||| || |||||||| || || || ||||| || Sbjct 123402 TGCTGATCTGGGGGGATCCCTTCCTTGTCTTGAATCTTAGCCTTGACATTTTCAATAGTG 123461 Query 563413 TCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472 |||| | | || | ||| | ||||||||||| | ||||| || ||||| ||| Sbjct 123462 TCAGAAGGCTCAACCTCCAAAGTGATGGTTTTACCAGTTAAGGTTTTCACAAAAATCTGC 123521 Query 563473 ATA 563475 ||| Sbjct 123522 ATA 123524 >seq3455 Length=151992 Score = 111 bits (122), Expect = 1e-18 Identities = 119/155 (77%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 429290 CGTACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAATCTCGACCAATAACA 429349 ||||||||||| |||| || ||||| ||||| ||||| ||||| || || |||||| Sbjct 64698 CGTACATTCAAAAGTTTACCACGCAGTGGGAATACTCCATAGTAATCGCGTCCTATAACA 64639 Query 429350 TTTAGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTCAAAATAAGTGTACAT 429409 |||||||| | || |||| ||| ||||||||||| || || || || || |||||| Sbjct 64638 CCGAGTCCAGAAACGGCCAAAGATTTGGCTGAATCTCCCTCAGTTAAGATCAGCGTACAT 64579 Query 429410 TT-ATATCCTTCTTTGGTACCAGCTTTGTGAGCAT 429443 || ||| | |||||| || ||||||| || |||| Sbjct 64578 TTCATAGCGTTCTTT-GTTCCAGCTTCGTTGGCAT 64545 >seq4008 Length=63261 Score = 102 bits (112), Expect = 7e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 549996 TAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTG 550055 ||||||| ||| | || ||||| || |||||||| |||| ||| |||| || || | Sbjct 30361 TAGGTATTGATCTGGGTACCACCTACTCATGTGTTGGAGTTTTCCAACATGGAAAGGTCG 30420 Query 550056 AAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAA 550115 ||||||||||||| || || || ||| | || || ||||||||||| ||||||| || | Sbjct 30421 AAATTATTGCCAACGACCAGGGCAACCGCACCACCCCATCTTATGTGGCTTTCACCGACA 30480 Query 550116 CTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151 | || | | | | |||||||| || || | |||| Sbjct 30481 CCGAGCGTCTCATCGGTGATGCCGCCAAGAACCAAG 30516 >seq4643 Length=985661 Score = 95.1 bits (104), Expect = 1e-13 Identities = 188/278 (68%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 685243 AAAACAAATCTCTGGCTCTTTCAGTTTCCGCTCCTGTAttttttttAAGATCGAGGAAAA 685302 |||||||||| ||||||||||| ||| |||||||| ||||| |||| ||||| Sbjct 333301 AAAACAAATCCCTGGCTCTTTCCTCTTCATTCCCTGTATTCTTTTTTAGATTCAGGAATT 333242 Query 685303 AATAAATATCTGCATGCCAAGGTTCAATATAAATAGCAAATGAACCAGCTCTTTTGCCTC 685362 ||||||||||||||| || || | ||| | ||||| | ||||| || | | || | Sbjct 333241 CCATAATATCTGCATGCCACGGCTCCAAATACACAGCAACAGCACCAGGTCGTCTACCAC 333182 Query 685363 CTTGATTGGCATACCTCGATATATTATTAAATACAGTTAATACTC----GTAGACCACTT 685418 |||| || | ||||||| | |||| || || || | || || | |||| Sbjct 333181 CTTGGTTCACGTACCTCGCTGTATTGTTGAACACTTTGAACCATCCGAATTGAACCATCC 333122 Query 685419 GCTGTGCCTTGTGTAGAATTAATATAAGATCCATCCGCCCTAATATTTGAAACATTTACA 685478 | | | || |||| | |||| | ||| | || || ||||| || ||| | Sbjct 333121 GATTTACCGCCTGTACCAATAATTGGTGTTCCTGCTGCTCTTATATTATGAATATTAATT 333062 Query 685479 CCAATTCCACCAGCATATTTACTAATCATAGCACAATC 685516 ||||| ||||||||| | || |||||| |||||||| Sbjct 333061 CCAATGCCACCAGCAGACTTTGAAATCATTGCACAATC 333024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029050087028500