Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq4450 230 3e-55 >seq4450 Length=177458 Score = 230 bits (254), Expect = 3e-55 Identities = 576/861 (67%), Gaps = 22/861 (3%) Strand=Plus/Plus Query 36888 TGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCC 36947 || |||||||||||| ||||||| ||||| || ||||| |||| ||||| || ||| Sbjct 24025 TGGTATTCTCCAACTTTCTTTTCGAAGAAATTGGTTTTTCCGTCTATCGATATGTTATCC 24084 Query 36948 ATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGAT----AATTCCTTCAG 37003 ||||||| || ||||| | | || || | | | ||| || || ||| Sbjct 24085 ATAAAATTGAAGGGATTTCGCGAGTGGTAGAT--TTCAGC--GATTCCCAAATCTGCCAG 24140 Query 37004 AAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAG 37063 ||| | || || || ||||| ||||||| |||||| ||| | | || || || || | Sbjct 24141 CAGCTTGTCAGCCACGAATTCGATGTATTCACACATAAGTCCGCAATTCATGCCGATCAA 24200 Query 37064 TTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTAT 37123 ||| || | || || |||||| | ||| || | || |||||| | | || Sbjct 24201 AGATACAGGCAGGGCTTCGGTAAGAAACTCCTGTTCGATCTTCACGGCATCTCTGATGAT 24260 Query 37124 ATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATAT--TTAAACAATAAACATGCA 37181 || | | | ||| | | || | | | | ||||||| ||||| || Sbjct 24261 GTT--CTTGACCCTCTCCTCTGAAGGCTTCTGCACGACGTGCTTAAACATCAAACACGCG 24318 Query 37182 AAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGC 37241 || | || || | ||||||| || ||||| || || || || || | || ||| Sbjct 24319 AATTTGCAGTGCATCGCTTCATCCCTGGAGATCAACTCGTTGGAGAAAGTGAGACCGGGC 24378 Query 37242 ATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCT 37301 || || ||| | || || | ||| || || | || ||| || || ||||||||||| Sbjct 24379 ATCAATCCTTTCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCGGAGAAGAAAATACCC 24438 Query 37302 TCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAt 37361 || ||||||||||| || || | | | |||||| || | | | |||||||| Sbjct 24439 TCCACTGCTGCAAAAGCGACGACCCTTTCACCGAATGTCGCTTCTTGACTGGAAATCCAA 24498 Query 37362 ttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAG- 37420 ||| | |||||| ||||| ||| || ||| ||| ||||||||||| || | || Sbjct 24499 TTTAACGCCCAATCAGCCTTCTTTTTCACGCATGGAATAGTTTCAATTGCATTAAGAAGA 24558 Query 37421 AAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGA 37480 ||| |||| | |||||| |||| | |||||||| || || | ||||| ||||| || Sbjct 24559 AAACTTTTCTCCTTCAC-ATCTTTGATATAAGTGTCTATCAACAAACTGTACATCAGTGA 24617 Query 37481 GTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA-TTGAA 37539 ||| || || || || || ||||| | ||||| || | | || ||| |||| ||| | Sbjct 24618 GTGTATGTTCTCCATGGCAATCTGCATGCCATAGAAGAATTTTGCCTCA-ATAACTTGTA 24676 Query 37540 CATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGA 37599 | || ||| || |||| | | ||||||||| || || |||||| || ||||| | Sbjct 24677 CTTCTTTACTGAATCTCTCTACCAGGTTTTCATTGACAATACCATCAGAGGCAGCAAAAA 24736 Query 37600 AAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGA--TAATTTTTT-CCAATCAT 37656 | || | ||||| || || ||||| |||| |||||||| | ||||||| |||||| | Sbjct 24737 ATGCCAACACATACTTGATGAAATG--TTTC-TCATTTGAAGTCATTTTTTCCCAATCTT 24793 Query 37657 TAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTAT 37716 | || || || ||||||||||||| ||| ||||||| ||| || ||| || Sbjct 24794 TGTAGTCCTTCGACAAATCAACTTCATGAACCTTCCAAAATGAGGCCTCAGCTTGTTCAT 24853 Query 37717 ACATCGTCCAAATATCATTAT 37737 ||||| |||| || ||||||| Sbjct 24854 ACATCTTCCACATGTCATTAT 24874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592282371586000