Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1383 183 2e-41 >seq1383 Length=53393 Score = 183 bits (202), Expect = 2e-41 Identities = 354/522 (68%), Gaps = 8/522 (2%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 |||||||||| ||| ||||||||||| || || | || ||| ||||||||||| || || Sbjct 32148 AGCCCGGTGATGTGTGCCATCATGTAGGTAAGTAAAGCGTAACTGGCGATGTTGAACGGA 32089 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || ||||| ||||| ||| | || |||||||| ||| | || | |||||||| Sbjct 32088 ACTCCGAGTCCCATATCCGCGGATCTCTGGTAAAGCAGGCAGCTCAACTCTCCGTTAGCA 32029 Query 29989 ACGTAAAACT----GACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044 |||||||| | || ||| || || || || | |||||| | | ||| | Sbjct 32028 ACGTAAAATTGGACGAGACA----ATGACAAGGCGGTAAAGCCATCTGCGGAATGTCGAT 31973 Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104 || ||||| ||||||| ||||| | ||| || | ||| | ||| |||| | | Sbjct 31972 TGGATTCCAAGCGCACATTATGATCCTCCTATCGTTTGGTCTATTCTTGATCGTCTGGAT 31913 Query 30105 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30164 |||| ||||| ||||| | ||| | | ||| || || ||| | ||||| Sbjct 31912 CACGTTGTGCAGTTGATCAATACCCTTGTTGGTGTAATCGGCGTGCATCCCTTCGTACTT 31853 Query 30165 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30224 || ||| |||||||||| ||||| || || | || |||| ||| || || ||||| Sbjct 31852 GGCACCGTAATGCCTCCATTGGAATCCATAAATTGGACCCAAGTCACCTTCCTCCCTCGA 31793 Query 30225 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30284 | || || | ||||| || || |||| | ||| || ||||| || | | | Sbjct 31792 ATTCAACCCGACCGAATCCAAGAAATCCCTGGTGCTGTTTGCATCCCAAATGTGAATCTT 31733 Query 30285 CTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCAC 30344 | | || | || || | ||| ||| || |||| ||||||||||||||||||||| Sbjct 31732 CCTGTCCTGCAATTCCTTAGCGTTCGTGCTTCCCCTGATGAACCACAGCAGCTCCTCCAC 31673 Query 30345 GACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 |||| ||||||| ||||| | ||| ||||| || | ||||| Sbjct 31672 GACGCCCTTCCAGAAGACTCGCTTCGTCGTCAGCAATGGAAA 31631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408594442874450