Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq830 118 8e-22 seq429 98.7 8e-16 seq1314 84.2 2e-11 >seq830 Length=194395 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| || ||| || || || || ||||| ||||| ||| | | Sbjct 123306 AGACGCAAAACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTCCTG 123365 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||| ||||||||||| |||| || || ||||| | ||| | || ||| Sbjct 123366 CCATCTTCCAACTGTTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGGATCCCTTCC 123425 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | || || || | ||| ||||||| || Sbjct 123426 TTGTCTTGAATCTTAGCCTTGACATTTTCAATAGTGTCAGAAGGCTCAACCTCCAAAGTG 123485 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || ||||| |||||||||||||| Sbjct 123486 ATGGTTTTACCAGTTAAGGTTTTCACAAAAATCTGCAT 123523 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || ||||| | ||| || ||| ||| || ||||| || ||||| || | | ||| | Sbjct 122850 AGACGTAACACTAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCCGACAAAGTTCTA 122909 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| |||||||| ||||| |||| || || || || | |||| || || Sbjct 122910 CCATCCTCCAATTGCTTACCCGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCT 122969 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||||| | | | || || | ||||||||||| || Sbjct 122970 TTGTCTTGAATTTTAGCCTTTACGTTCTCAATTGTGTCCGATGGCTCCACCTCCAAAGTG 123029 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||||||||||||||| || ||||||||||| Sbjct 123030 ATAGTCTTTCCCGTCAAAGTTTTCACGAAAATCTGCAT 123067 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 || || ||||| || || || || || || || ||||| ||||| ||| ||| | Sbjct 122625 CGTAAAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTGCCA 122684 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| ||||| || ||||| |||| ||||| ||||| | |||| || ||||| Sbjct 122685 TCTTCCAATTGCTTGCCAGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCTTCCTTA 122744 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCC-ACAGACTCTGACGCCTCCACCTCCACCGTAAT 48730 || || ||| | |||| | | | | | || |||| |||||||||| || || Sbjct 122745 TCCTGGAT-TTTGGCTTTAACGTTCTCGATTGTATCAGACGGTTCCACCTCCAAAGTGAT 122803 Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||||||||||||||| || |||||||| Sbjct 122804 AGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 122839 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || ||||| |||||||||| || || ||||| |||||||||||||| Sbjct 123069 CCGCCTCGAAGACGCAAAACCAAATGTAATGTAGATTCCTTTTGGATATTGTAATCAGAC 123128 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | | || |||||||| ||||| || || |||| || || ||||| | ||| Sbjct 123129 AAGGTCCTGCCATCCTCCAACTGTTTACCTGCGAAGATCAAACGTTGCTGATCTGGAGGA 123188 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC-CCACAGACTCTGACGCCTCCAC 48718 | || |||||||| ||| ||| | ||| | | | | | || || | || || Sbjct 123189 ATACCTTCCTTGTCTTGAAT-TTTGGCCTTAACGTTCTCAATTGTATCGGATGGTTCAAC 123247 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || |||||||| ||||| |||||||||||||| ||||| Sbjct 123248 TTCTAAGGTGATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 123295 >seq429 Length=41586 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||||| || | ||| || || || || ||||| || || Sbjct 1110 CCACCCCTGAGGCGGAGGACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCCGAC 1169 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || || | ||||||||||| || || || || || ||||| | |||| Sbjct 1170 AGAGTACGTCCATCCTCGAGTTGCTTACCGGCGAAGATAAGACGTTGCTGATCTGGGGGA 1229 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || ||| | | | || || | ||| ||| Sbjct 1230 ATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACC 1289 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || ||||||||||||||||| ||||||||||| Sbjct 1290 TCAAGGGTGATGGTCTTACCCGTCAAAGTTTTTACGAAAATCTGCAT 1336 >seq1314 Length=49468 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||| || || || ||||| || || || | || Sbjct 22017 AGACGCAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGT 22076 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||||||||| || |||| || || ||||| | ||| | ||||| Sbjct 22077 CCATCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGGATTCCCTCT 22136 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || || | ||| ||||| | || Sbjct 22137 TTGTCCTGGATCTTGGCCTTCACATTTTCGATAGTATCGGAGGGCTCGACCTCGAGGGTG 22196 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || ||||| | ||||| || ||||| |||||| Sbjct 22197 ATGGTCTTACCCGTTAGGGTTTTCACGAAAATTTGCATC 22235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380916011551950