Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4450 170 4e-37 >seq4450 Length=177458 Score = 170 bits (188), Expect = 4e-37 Identities = 485/750 (65%), Gaps = 11/750 (1%) Strand=Plus/Minus Query 25576 GAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAAC 25635 ||| | ||||| ||||||| ||||||||||| ||||| |||||||||||||| || || Sbjct 24767 GAGAAACATTTCATCAAGTATGTGTTGGCATTTTTTGCTGCCTCTGATGGTATTGTCAAT 24708 Query 25636 GAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTAC 25695 || || ||| |||||||||| | ||||| || | ||||| || | ||||| Sbjct 24707 GAAAACCTGGTAGAGAGATTCAGTAAAGAAGTACAAGTTATTGAGGCAAAATTCTTCTAT 24648 Query 25696 GGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---G 25752 || | ||||| ||||| || || | ||||| | |||| || | |||| Sbjct 24647 GGCATGCAGATTGCCATGGAGAACATACACTCACTGATGTA---CAGTTTGTTGATAGAC 24591 Query 25753 ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCC 25812 || || || | ||| || |||| | | || || ||| || || || || Sbjct 24590 ACTTATATCAAAGATGTGAAGGAGAAAAGTTTTCTTCTTAATGCAATTGAAACTATTCCA 24531 Query 25813 AGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTT 25872 || | || | |||||| ||||| | || ||||| ||| || || || || Sbjct 24530 TGCGTGAAAAAGAAGGCTGATTGGGCGTTAAATTGGATTTCCAGTCAAGAAGCGACATTC 24471 Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || || || | || || ||||| || |||||||| || || ||| ||| || || Sbjct 24470 GGTGAAAGGGTCGTCGCTTTTGCAGCAGTGGAGGGTATTTTCTTCTCCGGCAGTTTCGCC 24411 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991 | ||||||||||| ||| |||| || |||||||| || ||||| ||||||||| | Sbjct 24410 TCGATCTTCTGGCTGAAGAAGAAAGGATTGATGCCCGGTCT-CACTTTCTCCAACGAGTT 24352 Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTT 26051 ||| |||||| || | | ||| | | || || || || | | | | ||| | Sbjct 24351 GATCTCCAGGGATGAAGCGATGCACTGCAAATTCGCGTGTTTGATGTTTAAG---CACGT 24295 Query 26052 GCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGA 26111 | || || ||||| | |||| ||| | | ||||||| ||| || ||| ||||||| Sbjct 24294 CGTGCAGAAGCCTTCAGAGGAGAGGGTCAAGAACATCATCAGAGATGCCGTGAAGATCGA 24235 Query 26112 GAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCAT 26171 ||||||||| | |||||||| | |||| || Sbjct 24234 ACAGGAGTTTCTTACCGAAGCCCTGCCTGTATCTTTGATCGGCATGAATTGCGGACTTAT 24175 Query 26172 GAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACT 26231 | | ||||||| || | ||||| ||| | |||||| | ||||| |||| | | Sbjct 24174 GTGTGAATACATCGAATTCGTGGCTGACAAGCTGCTGGCAGATTTGGGAATCGCTGAAAT 24115 Query 26232 CTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 |||| ||| || || ||| | |||||||| ||||||||| | || || || ||||| Sbjct 24114 CTACCACTCGCGAAATCCCTTCAATTTTATGGATAACATATCGATAGACGGAAAAACCAA 24055 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||| ||||||| || || || || || Sbjct 24054 TTTCTTCGAAAAGAAAGTTGGAGAATACCA 24025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928790810896000