Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1908 172 3e-38 seq4643 136 2e-27 seq4241 102 4e-17 >seq1908 Length=44741 Score = 172 bits (190), Expect = 3e-38 Identities = 298/430 (69%), Gaps = 5/430 (1%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||||||||| ||||| ||||||| |||||||| |||||||| ||||| ||||| || Sbjct 5138 CATAAATAAGTCTGGTATCCACAAAGCATAAAACAAATCTCTGGCTCTTTCCTCTTCATT 5079 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| |||||||||||||| ||||| || | ||| || | ||||| || |||||||| Sbjct 5078 TCCAGTATTCTTTTTTAGATTCAAGAATTCCATAATGTCAGCATGCCAAGGCTCTAAATA 5019 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 | |||| | ||| || || |||||||| | |||||| || || || | || Sbjct 5018 CACTGCAACAGCACCAGGTC---GTCTACCACCTTGGTTTACGTACCTCGCTGTATGGTT 4962 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 ||| ||||||||||| || || | |||| || ||| ||| | | ||| | Sbjct 4961 GAACACTTTCAACATAGGCACAATTCCATCAGATTTACCGCCTGTACCAATAATTGGTGT 4902 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 ||||| | |||||||| ||| || ||| || || |||||||| | |||||||| Sbjct 4901 TCCTGCTGCTCTAATATTATGAATATTAATTCCAATGCCACCAGCAGACTTTGAAATCAT 4842 Query 26233 TGCACAATCTGAAACTGTATCGA-AAATTCCTTTTATGCTATCACCTTTCATTCCTAATA 26291 ||||||||| |||| || || | |||| || | ||| || ||| |||| Sbjct 4841 TGCACAATCAGAAA-TGCATTTATAAATACCAGCAAGTGAATCTTCTGGCATCATCAATA 4783 Query 26292 AAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCAT 26351 ||||||| || || || | | || || |||| | ||||||||| || |||||| Sbjct 4782 AAAAACATGAGCTCAACTGTGGCTTAGGAGTGCCTGCAGAAAATAATGTTGGACTAGCAT 4723 Query 26352 GAGTATAATA 26361 | ||| |||| Sbjct 4722 GGGTAAAATA 4713 >seq4643 Length=985661 Score = 136 bits (150), Expect = 2e-27 Identities = 224/318 (70%), Gaps = 10/318 (3%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTT- 25991 ||||||||| ||||| ||||||| |||||||| ||||| || ||||| ||| |||| Sbjct 333330 CATAAATAAGTCTGGTATCCACAAGGCATAAAACAAATCCCTGGCTCT---TTCCTCTTC 333274 Query 25992 -TTCCGTG-ATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAA 26049 |||| || |||||||||||||| | ||| || | |||||||| ||||| || || || Sbjct 333273 ATTCCCTGTATTCTTTTTTAGATTCAGGAATTCCATAATATCTGCATGCCACGGCTCCAA 333214 Query 26050 ATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTC 26109 ||| | ||||| | ||| || || |||||||| | ||||| || || || | Sbjct 333213 ATACACAGCAACAGCACCAGGTC---GTCTACCACCTTGGTTCACGTACCTCGCTGTATT 333157 Query 26110 ATTGAAAACTTTCAA-CATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCT 26168 ||||| ||||| || ||| ||| | | ||| || ||| ||| | | ||| Sbjct 333156 GTTGAACACTTTGAACCATCCGAATTGAACCATCCGATTTACCGCCTGTACCAATAATTG 333097 Query 26169 TGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAA 26228 | ||||| | ||| |||| ||| || ||| || || |||||||| | ||||||| Sbjct 333096 GTGTTCCTGCTGCTCTTATATTATGAATATTAATTCCAATGCCACCAGCAGACTTTGAAA 333037 Query 26229 TAGCTGCACAATCTGAAA 26246 | ||||||||| |||| Sbjct 333036 TCATTGCACAATCAGAAA 333019 >seq4241 Length=192509 Score = 102 bits (112), Expect = 4e-17 Identities = 212/315 (67%), Gaps = 3/315 (1%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| || || || ||||||| |||||||| ||||| || ||||| ||||| || Sbjct 52879 CATAAACAAGTCCGGTATCCACAAGGCATAAAACAAATCCCTGGCTCTTTCCTCTTCATT 52938 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| |||| |||| |||| | ||| || | ||| || | ||||| || || ||||| Sbjct 52939 TCCCGTATTCCTTTTCAGATTCACGAATTCCATAATGTCAGCATGCCAAGGCTCCAAATA 52998 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 | |||| || |||| | || |||||| | |||| || || |||| || Sbjct 52999 CACCGCAACGGAGCCAGGTCTTCTACC---ACCTTGGTTCACGTGCCTCGCTGTTTGGTT 53055 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 ||| ||||||||||| || || | |||| || || |||| | |||| | Sbjct 53056 GAACACTTTCAACATAGGCACAATTCCATCCGATTTACCCCCATTGCTCTTAATCAGTGT 53115 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 ||| | | ||| |||| |||| | ||| || || |||||||| | || | ||| Sbjct 53116 TCCCGCTGCTCTTATATTGTGAATGTTAATTCCAATACCACCAGCAGACTTGGTAATCTT 53175 Query 26233 TGCACAATCTGAAAC 26247 ||||||||||||| Sbjct 53176 CACACAATCTGAAAC 53190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253025659748750