Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq71 102 9e-17 >seq71 Length=194365 Score = 102 bits (112), Expect = 9e-17 Identities = 212/309 (69%), Gaps = 10/309 (3%) Strand=Plus/Plus Query 139243 TTCTTGCTATAGCATGTAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATAT 139302 || |||| ||| | | ||||| | | || || || | || || | | ||||||| | Sbjct 102735 TTGTTGCGATATCCTTAAGTCCTTGCGGTCCGTGGTAAACGGCGTACATTGCAGACATGT 102794 Query 139303 TTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCT 139362 |||| | | ||||| || ||||| ||||| || || ||||| || ||||||||||| | Sbjct 102795 TTGCCAATAAAGCTTGAGCAGTGCAAATGTTGCTTGTGGCTTTATCCCTTCTAATATGTT 102854 Query 139363 GCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTC-GC-TGTCCACTGACTG 139420 |||| |||||||| | |||| ||||| || ||| | || | || | || Sbjct 102855 GCTCCCTAGTTTGCAAGGCTAGCCTGTAAGCGTCGCGACCTGCAGCATCTCTGGTAAC-- 102912 Query 139421 ACCTACAATTCTGCCAGGTATCTTTCT---CTTATACTTGTCTGTTGTTGCAAAGAATGC 139477 || | || || || || ||| ||| | | || ||| || | |||||||| | Sbjct 102913 CCCAATCATCCTTCCTGGCATCAGTCTAACCAAAGAC-TGTTTGCAG--GCAAAGAAACC 102969 Query 139478 AGCATGAGGACCTCCGTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAAT 139537 ||| |||||||| |||||||||| ||||| || |||||||| | | || |||||||| Sbjct 102970 AGCGTGAGGACCACCGTATCCCAAAGGAACTCCGAACCTTTGAGAAGTGCCCACAGCAAT 103029 Query 139538 ATCAAATCC 139546 ||| | ||| Sbjct 103030 ATCCACTCC 103038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578964745718000