Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq830 113 8e-20 seq1314 95.1 2e-14 >seq830 Length=194395 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || | || || ||| || || ||||| ||||||||||| || | Sbjct 123342 ATGTTGTAGTCAGACAGAGTCCTGCCATCTTCCAACTGTTTACCGGCAAAAATCAAACGT 123401 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| || || || ||||| || ||||| || || | || | |||| |||||| Sbjct 123402 TGCTGATCTGGGGGGATCCCTTCCTTGTCTTGAATCTTAGCCTTGACATTTTCAATAGTG 123461 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| |||||| || | ||| || |||||||| |||| ||||| ||||| || ||| Sbjct 123462 TCAGAAGGCTCAACCTCCAAAGTGATGGTTTTACCAGTTAAGGTTTTCACAAAAATCTGC 123521 Query 193359 AT 193360 || Sbjct 123522 AT 123523 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| || || || | || || ||| || |||||||||||||| || ||||| | Sbjct 123816 ATATTGTAATCAGACAGAGTCCTGCCATCTTCCAATTGTTTTCCGGCGAAGATTAAACGT 123875 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| || || |||||||| || ||||| ||||||| || | || ||| ||| Sbjct 123876 TGCTGATCTGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACGTTCTCAATTGTA 123935 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| | |||||||||| ||| || ||||| || || | ||||| || || || ||| Sbjct 123936 TCGGATGGTTCAACTTCTAAAGTGATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTGC 123995 Query 193359 AT 193360 || Sbjct 123996 AT 123997 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| || || || || || || ||| || || ||||| || || || || || | Sbjct 123114 ATATTGTAATCAGACAAGGTCCTGCCATCCTCCAACTGTTTACCTGCGAAGATCAAACGT 123173 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| ||||| || ||||| || ||||| ||||||| || | || ||| ||| Sbjct 123174 TGCTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTGGCCTTAACGTTCTCAATTGTA 123233 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| | |||||||||| || || ||||| || || | ||||||||||| |||||| Sbjct 123234 TCGGATGGTTCAACTTCTAAGGTGATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGC 123293 Query 193359 AT 193360 || Sbjct 123294 AT 123295 >seq1314 Length=49468 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| | || | ||| || | || || ||||| || || || | Sbjct 22053 ATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGCTGCTTACCGGCGAAGATCAAACGT 22112 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| || || ||||| ||||| || || || |||| || | |||| |||||| Sbjct 22113 TGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATCTTGGCCTTCACATTTTCGATAGTA 22172 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| | ||| || || || || || || ||||| ||||| ||||| || || |||||| Sbjct 22173 TCGGAGGGCTCGACCTCGAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAAATTTGC 22232 Query 193359 AT 193360 || Sbjct 22233 AT 22234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899602107588000