Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4450 158 2e-33 seq830 129 9e-25 >seq4450 Length=177458 Score = 158 bits (174), Expect = 2e-33 Identities = 491/757 (65%), Gaps = 23/757 (3%) Strand=Plus/Plus Query 17869 GTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCAT 17928 ||||||||| ||||| || ||||||||||| || ||||| || | ||||| || ||| Sbjct 24027 GTATTCTCCAACTTTCTTTTCGAAGAAATTGGTTTTTCCGTCTATCGATATGTTATCCAT 24086 Query 17929 AAAATCAAATGGATT-----AGTGGTTTTATAATATTTTTCTTGTATT---AATTCGTAT 17980 ||||| || ||||| |||||| | |||| ||| || || Sbjct 24087 AAAATTGAAGGGATTTCGCGAGTGGT--------AGATTTCAGCGATTCCCAAATCTGCC 24138 Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGT 18040 | | | || || || ||||||| |||| |||| | |||||||||| || | Sbjct 24139 AGCAGCTTGTCAGCCACGAATTCGATGTATTCACACATAAGTCCGCAATTCATGCCGATC 24198 Query 18041 AGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATT 18100 | | ||| || || || ||| ||| || | || |||| || | ||| | || Sbjct 24199 AAAGATACAGGCAGGGCTTCGGTAAGAAACTCCTGTTCGATCTTCACGGCATCTCTGATG 24258 Query 18101 ATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACAC 18160 ||||| | ||||| | || || | | | ||| ||| || || | ||||| Sbjct 24259 ATGTTCTTGACCCTCTCCTCTGAAGGCTTCTGCACGACGTGCTTA-AACATCA--AACAC 24315 Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 || || | ||| | ||||||| ||||| || || ||||| || || | ||| Sbjct 24316 GCGAATTTGCAGTGCATCGCTTCATCCCTGGAGATCAACTCGTTGGAGAAAGTGAGACCG 24375 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 ||||| | ||| | || || ||||| || ||||| |||||||| | || ||||| ||| Sbjct 24376 GGCATCAATCCTTTCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCGGAGAAGAAAATA 24435 Query 18281 CCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTAT-TTATTG-CTCAGTA 18338 ||||| || || || || | | |||||| | || ||| || ||| || | Sbjct 24436 CCCTCCACTGCTGCAAAAGCGACGACCCTTTCACCGAA--TGTCGCTTCTTGACTGGAAA 24493 Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 |||| ||| ||||| || | | | || || ||| | || || ||||||| Sbjct 24494 TCCAATTTAACGCCCAATCAGCCTTCTTTTTCACGCATGGAATAGTTTCAATTGCATTAA 24553 Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458 | | | ||| || || |||||| ||||||||||| || |||||| ||||| Sbjct 24554 GAAGAAAACTTTTCTCCTTCACATCTTTGATATAAGTGTCTATCAACAAACTGTACATCA 24613 Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATT 18518 || |||||| | ||||| || ||||| | | ||| || || | ||||| | || Sbjct 24614 GTGAGTGTATGTTCTCCATGGCAATCTGCATGCCATAGAAGAATTTTGCCTCAATAACTT 24673 Query 18519 GAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 | | || || ||||| ||||||| || ||||| || ||||| |||| | || | Sbjct 24674 GTACTTCTTTACTGAATCTCTCTACCAGGTTTTCATTGACAATACCATCAGAGGCAGCAA 24733 Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATT 18615 |||||||||| ||||| || ||||||||||| ||||| Sbjct 24734 AAAATGCCAACACATACTTGATGAAATGTTTCTCATT 24770 >seq830 Length=194395 Score = 129 bits (142), Expect = 9e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||||||||||||||||||||| ||||| || ||||| ||| ||| Sbjct 124225 ATGCAGATCTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCATCT 124166 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || ||||| ||||| || ||||| || |||||||| || Sbjct 124165 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCTCCAGATCAG 124106 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | || ||||| || | |||||| ||| ||| | ||||| || | Sbjct 124105 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCAGACTACA-- 124048 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| || | || |||||||| || || Sbjct 124047 ACATCCAAAAGGAATCTACCCTTCATTTGGTATT 124014 Score = 129 bits (142), Expect = 9e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||| |||||||||||||| ||||| || ||||| ||| ||| Sbjct 124681 ATGCAGATCTTTGTTAAAACCTTGACTGGAAAAACCATTACCTTGGAAGTTGAACCATCT 124622 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| ||||| ||||| || ||||| || || ||||| ||| Sbjct 124621 GACACAATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAA 124562 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | || |||||||| | |||||| ||| ||| | || || || || Sbjct 124561 CAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCAGGACTCTGTCGGACTACAAC 124502 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| || | || |||||||| || || Sbjct 124501 AT-TCAAAAGGAATCCACCCTTCATTTGGTATT 124470 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| |||||||||||||||||||| || ||||| ||| ||| Sbjct 124453 ATGCAGATCTTCGTTAAAACCTTGACTGGAAAAACTATTACCTTGGAAGTTGAACCATCT 124394 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || ||||| ||||| || ||||| || |||||||| || Sbjct 124393 GACACAATTGAAAACGTAAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGATCAG 124334 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| ||||| || | |||||| ||| ||| | || || || || Sbjct 124333 CAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCCGACTACAAC 124274 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || || | || || |||||||| || Sbjct 124273 ATCCAGAAGGAATCTACTCTCCATTTAGTATT 124242 Score = 122 bits (134), Expect = 1e-22 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| |||||||||||||| || || |||||||| ||| || Sbjct 123295 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATCACCTTAGAAGTTGAACCATCC 123236 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || ||||| ||||| || ||||| || |||||||| || Sbjct 123235 GATACAATTGAGAACGTTAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAG 123176 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | || ||||| ||| | || ||| ||| || || || ||||| | Sbjct 123175 CAACGTTTGATCTTCGCAGGTAAACAGTTGGAGGATGGCAGGACCTTGTCTGATTACA-- 123118 Query 156003 ATATCCAAA 156011 ||||||||| Sbjct 123117 ATATCCAAA 123109 Score = 122 bits (134), Expect = 1e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| ||||||||||||||||| || || ||||| ||| || Sbjct 123751 ATGCAGATCTTCGTTAAAACCTTGACTGGAAAAACTATCACTTTGGAAGTTGAACCATCC 123692 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| || |||||| ||||| || ||||| || || ||||| || Sbjct 123691 GATACAATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCCCCAGATCAG 123632 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | |||||||| || | |||||| ||| ||| | || ||||| ||| Sbjct 123631 CAACGTTTAATCTTCGCCGGTAAACAATTGGAAGATGGCAGGACTCTGTCTGATTACAAT 123572 Query 156003 AT 156004 || Sbjct 123571 AT 123570 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||||||||||||||||||||| || || |||||||| ||| || Sbjct 123997 ATGCAGATCTTCGTTAAAACATTGACTGGAAAAACCATCACTTTAGAAGTTGAACCATCC 123938 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || ||||| ||||| || ||||| || || ||||| || Sbjct 123937 GATACAATTGAGAACGTTAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCAGATCAG 123878 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||||| || || | |||||| ||| ||| | || ||||| ||| Sbjct 123877 CAACGTTTAATCTTCGCCGGAAAACAATTGGAAGATGGCAGGACTCTGTCTGATTACAAT 123818 Query 156003 AT 156004 || Sbjct 123817 AT 123816 Score = 96.9 bits (106), Expect = 5e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| || ||||| ||||| || || || || || || ||| Sbjct 124909 ATGCAGATCTTTGTGAAAACCTTAACTGGTAAAACCATCACTTTGGAGGTTGAGCCCTCT 124850 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||| ||| || ||||| ||||| || || || || || || Sbjct 124849 GATACCATTGAAAATGTGAAGGCTAAGATTCAAGACAAAGAGGGAATCCCACCTGATCAG 124790 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | || ||||| || | |||||| ||| ||| | || || || || Sbjct 124789 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCGGACTACAAC 124730 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 || ||||| || | || ||||||||||| || Sbjct 124729 AT--CCAAAAGGAATCTACACTTCATTTAGTATT 124698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731829459940000