Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq429 86.0 5e-12 seq830 84.2 2e-11 seq1636 82.4 6e-11 >seq429 Length=41586 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| ||||| || |||||||| || || || ||||| ||| | || ||| || Sbjct 1339 AAAATGCAGATTTTCGTAAAAACTTTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCT 1280 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||||| ||| | || || ||||| || || || || | ||| ||| Sbjct 1279 TCCGATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCAGAT 1220 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| | ||||| | || ||||| || || ||||| | || || |||||||| Sbjct 1219 CAGCAACGTCTTATCTTCGCCGGTAAGCAACTCGAGGATGGACGTACTCTGTCGGACTAC 1160 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || ||||| || || |||||| |||| Sbjct 1159 AACATCCAGAAGGAATCCACTTTGCACTTGGT 1128 >seq830 Length=194395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| ||||| || || || |||||||| ||| | ||| || | | Sbjct 123295 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATCACCTTAGAAGTTGAACCATCC 123236 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || || ||| || || ||||| | || |||||| Sbjct 123235 GATACAATTGAGAACGTTAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAG 123176 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | || | || ||||||||| ||||||| | || || || | || ||||| Sbjct 123175 CAACGTTTGATCTTCGCAGGTAAACAGTTGGAGGATGGCAGGACCTTGTCTGATTACAAT 123116 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || |||||||| ||||| || || |||| ||| | | ||||| |||| Sbjct 123115 ATCCAAAAGGAATCTACATTACATTTGGTTTTGCGTCTTCGAGGCGGAA 123067 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| ||||| ||||| || |||||||| || | || ||| || Sbjct 123523 ATGCAGATTTTTGTGAAAACCTTAACTGGTAAAACCATCACTTTGGAGGTTGAGCCTTCT 123464 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || || |||||| || || ||||| | ||| |||||| Sbjct 123463 GACACTATTGAAAATGTCAAGGCTAAGATTCAAGACAAGGAAGGGATCCCCCCAGATCAG 123404 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | |||| ||| ||||||||| |||| || | || || || | ||||||||| Sbjct 123403 CAACGTTTGATTTTTGCCGGTAAACAGTTGGAAGATGGCAGGACTCTGTCTGACTACAAC 123344 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || ||||| || || | || |||| ||| Sbjct 123343 ATCCAGAAGGAATCCACTCTCCATTTGGTTTTG 123311 >seq1636 Length=121147 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 105081 GGACTGCACGGCTTTCACGTTCACGAGTTCGGCGATACCAGCAACGGCTGCACGTCCGCC 105140 || || ||||| || ||| | ||||||||||| || | || |||||| |||| || ||| Sbjct 3122 GGCCTCCACGGATTCCACATCCACGAGTTCGGTGACAACACCAACGGTTGCATCTCGGCC 3063 Query 105141 GGCGAGCACTTCAACCCTACGCGCCAAAATCACGGCGCTCCAGACGCCGCAGAAAGGCAC 105200 || |||||||| || | || | ||||||||| ||| | ||| | | | ||| Sbjct 3062 GGGCCCCACTTCAATCCGCAGGGCAAGGATCACGGCGGTCCCACCTCCGACGTACGTCAC 3003 Query 105201 GTCGGCGACCTGGGCAATGT 105220 ||||| ||||||||||| || Sbjct 3002 GTCGGTGACCTGGGCAACGT 2983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398854194903850