Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq830 145 7e-30 seq4241 120 3e-22 seq1314 84.2 2e-11 >seq830 Length=194395 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | |||||| |||||||| | |||||||| || || |||||||| ||| | Sbjct 124227 CCTCCACGAAGACGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 124286 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | ||||||||||||| |||||| |||||||||||| ||||| Sbjct 124287 AGAGTCCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 124346 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||||| |||| | ||| | ||||| | ||||| ||| Sbjct 124347 ATTCCTTCCTTGTCTTGGATTTTGGCCTTTACGTTTTCAATTGTGTCAGATGGTTCAACT 124406 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | || || || ||||| ||||| ||||| || |||||| Sbjct 124407 TCCAAGGTAATAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCATA 124454 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || ||||||| |||||||| ||||| |||||||| || | Sbjct 123999 CCACCACGAAGACGCAATACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGAC 124058 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | |||||||||||| |||||| |||||||||||| ||||| Sbjct 124059 AGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGAGGG 124118 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||||| || | | ||| | ||||| | ||||| ||| Sbjct 124119 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACT 124178 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | ||| | || || || ||||||||||| ||||| || |||||| || Sbjct 124179 TCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTGCATACCT 124229 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| | ||||||||| ||||| | ||||||||| ||||| || |||||||| | Sbjct 123069 CCGCCTCGAAGACGCAAAACCAAATGTAATGTAGATTCCTTTTGGATATTGTAATCAGAC 123128 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || | |||||||| || |||||| |||||||||||| ||||| Sbjct 123129 AAGGTCCTGCCATCCTCCAACTGTTTACCTGCGAAGATCAAACGTTGCTGATCTGGAGGA 123188 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| |||||| || | | || | || || | ||||| ||| Sbjct 123189 ATACCTTCCTTGTCTTGAATTTTGGCCTTAACGTTCTCAATTGTATCGGATGGTTCAACT 123248 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | || | || || || ||||| |||||||| || ||||||||| || Sbjct 123249 TCTAAGGTGATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCATACCT 123299 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | |||||| |||||||||| ||||||||| ||||| |||||||| || | Sbjct 124683 CCTCCACGAAGACGCAATACTAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCCGAC 124742 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | |||||||||||| |||||| |||||||||||| || || Sbjct 124743 AGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGTGGG 124802 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| ||| || || | | ||| | || || | ||| || || Sbjct 124803 ATTCCCTCTTTGTCTTGAATCTTAGCCTTCACATTTTCAATGGTATCAGAGGGCTCAACC 124862 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | || || || || || ||||| || || || ||||| Sbjct 124863 TCCAAAGTGATGGTTTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 124909 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || ||||| || ||||| ||||| || |||| || ||||| || || |||||||| || Sbjct 122610 TGTCCTCCACGCAAACGTAAAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCA 122669 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 || || || ||||| | ||| || |||||| | |||| ||| |||||||| || Sbjct 122670 GACAGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAAACGCTGCTGATCTGGT 122729 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || ||||| || || ||||| ||| | | || | || || | ||||| Sbjct 122730 GGAATTCCTTCCTTATCCTGGATTTTGGCTTTAACGTTCTCGATTGTATCAGACGGTTCC 122789 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || | ||| | ||||| || ||||| ||||||||||| || |||||| Sbjct 122790 ACCTCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCATA 122840 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | |||||| || ||||| | || ||||| || || || |||||||| | Sbjct 123525 CCTCCACGAAGACGCAATACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGAC 123584 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | ||||||||| || |||| | |||||||||||| || || Sbjct 123585 AGAGTCCTGCCATCTTCCAATTGTTTACCGGCGAAGATTAAACGTTGCTGATCTGGGGGG 123644 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||||| || | | ||| | || || | ||||| ||| Sbjct 123645 ATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATTGTATCGGATGGTTCAACT 123704 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | ||| | || || || ||||| ||||| ||||| || |||||| || Sbjct 123705 TCCAAAGTGATAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCATACCT 123755 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||||||||| ||||| | || ||||| || || |||||||| || | Sbjct 123297 CCTCCACGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 123356 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | |||||||| ||| | |||| |||||||||||| || || Sbjct 123357 AGAGTCCTGCCATCTTCCAACTGTTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGG 123416 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||| || || | | ||| | ||||| | || || || Sbjct 123417 ATCCCTTCCTTGTCTTGAATCTTAGCCTTGACATTTTCAATAGTGTCAGAAGGCTCAACC 123476 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | ||| | || || || || || ||||| || || || |||||| || Sbjct 123477 TCCAAAGTGATGGTTTTACCAGTTAAGGTTTTCACAAAAATCTGCATACCT 123527 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| || |||| ||| | || || || || || ||||| ||||| | Sbjct 122841 CCACCACGCAGACGTAACACTAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCCGAC 122900 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || | ||| ||||| ||| | |||| ||||||||| || ||||| Sbjct 122901 AAAGTTCTACCATCCTCCAATTGCTTACCCGCAAAAATCAAACGTTGCTGGTCTGGAGGA 122960 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| |||||| |||| | || | ||||| | || || || Sbjct 122961 ATACCTTCTTTGTCTTGAATTTTAGCCTTTACGTTCTCAATTGTGTCCGATGGCTCCACC 123020 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| || ||||| ||||| ||||| || ||||| Sbjct 123021 TCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTCACGAAAATCTGCAT 123067 >seq4241 Length=192509 Score = 120 bits (132), Expect = 3e-22 Identities = 252/368 (68%), Gaps = 21/368 (6%) Strand=Plus/Plus Query 151070 TCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATG 151129 ||||| || |||| || | || || | ||| |||||||||||||| || || || || Sbjct 52331 TCGCTTTCGAACGGAATCCTCATCAAGATAAAAGCATCGGCCAAACCCTGTATACCGATA 52390 Query 151130 CCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCA---ATAGGGTAGAAATTG 151186 || || |||||||| | |||||| || ||| | || |||| | ||| ||| | ||| Sbjct 52391 CCAATTGGACGATGTCTCATATTTGAGTTTCTAGC---TTCAGGCACAGGATAGTAGTTG 52447 Query 151187 CGATCAATAATTTTATTCAAA---CTATTCACTACATGTTTGACCACAGTGTGCAATAGT 151243 || || || || |||| | ||| | |||| ||||| | | || | | Sbjct 52448 ATGTCGATGATCTTGTTCAGATTTCTAGTAACTA---GTTTGGTGAGTTCCTTCAGT--T 52502 Query 151244 TGA--AAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGAT 151298 ||| ||||| || | |||| || | | | | || |||||||| ||||||| || Sbjct 52503 TGATGAAATCGAATGATTTATCTGGTTTTACAAACATGTTAACGGCAATTGACGCTAAAT 52562 Query 151299 TACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGC 151358 |||| |||||||||||||||||||| |||| |||||||| | |||| || || Sbjct 52563 TACAGACGGCAGTTTCGTCGGGCGCAGTGTATTCCACTATTTCTGTGCACAGGTTCGAGC 52622 Query 151359 ATTTTATCAATCCGCAATTACT-TTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAAC 151417 ||| || ||| ||| | || ||| ||||| || |||||| || |||||||| | | Sbjct 52623 TTTTGAT-TGTCCCCAAATTCTGTTGGTTGCTCTTCGAGTTGCAGGCATCCTTGTACATC 52681 Query 151418 ATGTACGG 151425 ||||| || Sbjct 52682 ATGTAAGG 52689 >seq1314 Length=49468 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || || || | || || || || || |||||||| ||| Sbjct 22008 CCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 22067 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | || ||||| || ||||| || |||||| |||||||||||| || || Sbjct 22068 AGGGTGCGTCCA-TCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGG 22126 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || |||||||| || || || | | ||| | || || | ||| || || Sbjct 22127 GATTCCCTCTTTGTCCTGGATCTTGGCCTTCACATTTTCGATAGTATCGGAGGGCTCGAC 22186 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || || | ||||| ||||| |||||||| Sbjct 22187 CTCGAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAAATTTGCAT 22234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488515603380000