Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1636 188 7e-43 seq429 107 2e-18 seq1314 105 6e-18 seq830 105 6e-18 seq1908 84.2 2e-11 >seq1636 Length=121147 Score = 188 bits (208), Expect = 7e-43 Identities = 243/335 (73%), Gaps = 3/335 (1%) Strand=Plus/Minus Query 116467 GGCCTGCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCC 116526 ||||| ||||| |||||| | |||||||| || |||| || |||||| |||| ||| ||| Sbjct 3122 GGCCTCCACGGATTCCACATCCACGAGTTCGGTGACAACACCAACGGTTGCATCTCGGCC 3063 Query 116527 GGCGAACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCAC 116586 || |||||||| || ||| |||| ||||||| |||| | ||| ||| |||||| Sbjct 3062 GGGCCCCACTTCAATCCGCAGGGCAAGGATCACGGCGGTCCCACCTCCGACGTACGTCAC 3003 Query 116587 GTCGGTGACCTGGGCAACATTGAGGCCAAAGTGTCCAACGCGCTCACTGCCGTGGACAAG 116646 |||||||||||||||||| | |||||| | ||||| || | ||| || Sbjct 3002 GTCGGTGACCTGGGCAACGTAGAGGCC---GGTAGCAACGGCGTCGCCATGGTGTCCATC 2946 Query 116647 ATCGACAACGTGATGACGCTGTTCGGCGAGTACAGCGTGCTCGGTCGCAGTCTCGTCGTG 116706 |||||| | ||| || |||||||| | ||||| | || || |||| |||||||| Sbjct 2945 TCCGACAAGGAGATCTCGTTGTTCGGCAACAACAGCATCCTGGGACGCACCCTCGTCGTC 2886 Query 116707 CACACCAACGCCGACGACCTGGGACTGGGCCAGCACCCGCTTAGCAAAACCACCGGCAAC 116766 ||| || | |||||||| ||||| |||| ||| || ||||| ||||| || ||| Sbjct 2885 CACGCCGATCCCGACGACATGGGAGCGGGCGGACACGAACTCAGCAAGACCACAGGAAAC 2826 Query 116767 TCGGGCGGCCGCCTCGGCTGCGGCATTATCGGCAT 116801 | |||| || |||| |||||| | |||||||| Sbjct 2825 GCCGGCGCTCGTCTCGCTTGCGGCGTCATCGGCAT 2791 >seq429 Length=41586 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| || || || | | | |||||||| ||||| || Sbjct 1140 GTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTACGTCCA-TCCTCGAGTTGCTTACC 1198 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || ||||| || || || || || |||||||| |||||| ||| Sbjct 1199 GGCGAAGATAAGACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCCTT 1258 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | || |||| ||||| || || | ||||| ||| || || |||| ||| Sbjct 1259 CACATTCTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGT 1318 Query 133643 TTTTACGAAAATCTGCAT 133660 |||||||||||||||||| Sbjct 1319 TTTTACGAAAATCTGCAT 1336 >seq1314 Length=49468 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| | ||| | | | |||||||| Sbjct 22029 AAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCA-TCCTCGAG 22087 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || | || ||||| || || ||||| || || ||||| ||| Sbjct 22088 CTGCTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGAT 22147 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | || |||| |||||| || |||| ||||| ||| || || Sbjct 22148 CTTGGCCTTCACATTTTCGATAGTATCGGAGGGCTCGACCTCGAGGGTGATGGTCTTACC 22207 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| ||||| Sbjct 22208 CGTTAGGGTTTTCACGAAAATTTGCAT 22234 >seq830 Length=194395 Score = 105 bits (116), Expect = 6e-18 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGG-ACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || || ||||| || || || | ||||| | | Sbjct 122864 ATGGAGGGTGGACTCCTTCTGAATGTTATAATCCGACAAAGTTCTACCA-TCCTCCAATT 122922 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| ||||| |||| | || |||||||| ||||| || ||||| ||||| ||| | Sbjct 122923 GCTTACCCGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT-TGAATT 122981 Query 133576 TTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || || || | | ||||| ||||| | |||||||| || | |||| || || || Sbjct 122982 TTAGCCTTTACGTTCTCAATTGTGTCCGATGGCTCCACCTCCAAAGTGATAGTCTTTCCC 123041 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||| |||||||||||||| Sbjct 123042 GTCAAAGTTTTCACGAAAATCTGCAT 123067 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCG 133511 ||||||| || || || || || ||||||||||| || || || | | ||||| Sbjct 123090 AAATGTAATGTAGATTCCTTTTGGATATTGTAATCAGACAAGGTCCTG--CCA-TCCTCC 123146 Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 | ||| || || ||| | || | || ||||| || ||||| || ||||||||||| || Sbjct 123147 AACTGTTTACCTGCGAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTGTC-TTG 123205 Query 133572 ATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTT 133630 | ||| | ||| | | ||||| || |||| || || || || | ||||| |||||| Sbjct 123206 AATTTTGGCCTTAACGTTCTCAATTGTATCGGATGGTTCAACTTCTAAGGTGATGGTTTT 123265 Query 133631 GCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||| |||||||| ||||| ||||| Sbjct 123266 TCCAGTCAAGGTTTTTACAAAAATTTGCAT 123295 >seq1908 Length=44741 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 148815 TTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACG 148874 || ||||| || || || | |||||| ||||| || ||||| || || | || || | Sbjct 5476 TTAACGGCAATGGACGCCAAATTGCAGACGGCAGTTTCATCGGGCGCAGTATATTCCATA 5417 Query 148875 ATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTG 148934 || || | ||||||||| || ||||| |||| |||||||| || ||||| | Sbjct 5416 ATTTCTGTGCACAGATTCGAGCTCTTGATTGTCCCCAAATTCTTTTGGTTACTCTTTGAG 5357 Query 148935 TTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| || |||||||||||||| || || Sbjct 5356 TTGCAGGCATCCTTGTACAGCATATAAGG 5328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483392701166000