Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1908 161 2e-34 seq4643 145 2e-29 seq3057 111 4e-19 >seq1908 Length=44741 Score = 161 bits (178), Expect = 2e-34 Identities = 559/852 (66%), Gaps = 30/852 (4%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGA-ACGTGCTTATTTACTTCGTGTCAATGGCGAGATCAT 110362 || ||||||||||| ||| | || | || | ||||| | | ||| | |||| | Sbjct 4557 TACTTTGGTTTCAAGACTTTGGAGAAGT-CATATTTGTTGAAGATTAATAACAAGATTGT 4615 Query 110363 TGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAA 110422 ||| | ||||| |||||| | | | || || | ||||| |||||| | || ||||| Sbjct 4616 TGAGAGACCTCAGCACATGCTGATGAGAGTAGCTGTGGGTATACATGGAGAGGACATTAA 4675 Query 110423 AGCTGTTATTGAATGTTATGATGTAT-TAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481 ||| ||||| || || ||| | | ||||| | || ||||||| ||| | Sbjct 4676 GTCTGCAATTGAGACATACCAT-TATATGTCTGAAAAGTATTTTACCCATGCTAGTCCAA 4734 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | ||||| ||||| ||| | ||| ||| || || ||| | | || Sbjct 4735 CATTATTTTCTGCAGGCACTCCTAAGCCACAGTTGAGCTCATGTTTTTTATTGATGATGC 4794 Query 110542 ACGATGATTCTATTGAAGGTATTTATGA-TGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 || ||||| ||| ||||||||| | ||| || || ||| | ||||| ||| Sbjct 4795 CAGAAGATTCACTTGCTGGTATTTATAAATGCATTTCT-GATTGTGCAATGATTTC-AAA 4852 Query 110601 AACT-CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCA---AATAT 110656 || |||| || ||||| ||| | ||||| ||||| | || |||| || | ||| Sbjct 4853 GTCTGCTGGTGGCATTGGAATTAATATTCATAATATTAGAGCAGCAGGAACACCAATTAT 4912 Query 110657 CGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACAC 110716 | |||| ||| || |||| |||| || ||||| | ||| |||||| | || Sbjct 4913 TGGTACAGGC---GGTAAATCTGATGGAATTGTGCCTATGTTGAAAGTGTTCAACCATAC 4969 Query 110717 TGCAAAATATGTGAATCAAGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAACC 110776 || | || || || |||||||||| || ||| | |||| | ||| | || || Sbjct 4970 AGCGAGGTACGTAAACCAAGGTGGTAGACGACCTGGTGCTGTTGCAGTGTATTTAGAGCC 5029 Query 110777 TTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAA----GGATTTGAAG 110832 ||||||| | || || | |||||||| ||| || |||||| || ||| ||||| Sbjct 5030 TTGGCATGCTGACATTATGGAATTCTT-GAA--TC-TAAAAAAGAATACTGGAAATGAAG 5085 Query 110833 AACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTG 110892 | ||||||| | ||||| |||||||| ||||||| |||| ||||| |||||||||| Sbjct 5086 AGGAAAGAGCCAGAGATTTGTTTTATGCTTTGTGGATACCAGACTTATTTATGAAACGTG 5145 Query 110893 TTCAAGAAA---ATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTG 110949 | ||| | || | | ||||| || ||||| |||||| | ||| || |||| | Sbjct 5146 T---AGACACTGATAGTGTCTGGTCACTGATGTGCCCTCATAAGTGTCCAGGATTATCGG 5202 Query 110950 ATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTC 111009 | | || ||||||| ||| | || || |||||||| ||| ||||| || | | Sbjct 5203 AATGCTGGGGCGAAGAGTTCGAAAAGCTCTATGAAAAATACGAAGCTGAAGGTAAATATA 5262 Query 111010 GCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTG 111069 |||||| || || ||| |||| ||||| | ||| || || ||| |||| || Sbjct 5263 ACAAACAGATACCGGCTAGAGAAGTTTGGCGCGCAATTGTTATCTCGCAAATTGAGGTTG 5322 Query 111070 GAACTCCTTATATTTTGTATAAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTA 111128 | ||||||||| |||| || ||| | | | || || ||| |||| |||||| Sbjct 5323 GTGTTCCTTATATGCTGTACAAGGATGCCTGCAACTC-AAAGAGTAACCAAAAGAATTTG 5381 Query 111129 GGAACAATTAAG 111140 || ||||| ||| Sbjct 5382 GGGACAATCAAG 5393 >seq4643 Length=985661 Score = 145 bits (160), Expect = 2e-29 Identities = 277/404 (69%), Gaps = 8/404 (2%) Strand=Plus/Plus Query 110696 GTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAATGGCTC 110755 ||| | ||| |||||| | || || | || ||||| |||||||||| || ||| | Sbjct 333141 GTTCAAAGTGTTCAACAATACAGCGAGGTACGTGAACCAAGGTGGTAGACGACCTGGTGC 333200 Query 110756 ATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAA 110815 ||||| | ||| | || || |||||| ||||||| | |||||| | | || || Sbjct 333201 TGTTGCTGTGTATTTGGAGCCGTGGCATGCAGATATTATGGAATTCCTGAATCTAAAAAA 333260 Query 110816 AAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 ||| ||| |||||| ||||||| | ||||| |||||||| ||||||| |||| Sbjct 333261 GAATACAGGGAATGAAGAGGAAAGAGCCAGGGATTTGTTTTATGCCTTGTGGATACCAGA 333320 Query 110876 TTTATTCATGAAACGTGTTCAAGAAA---ATGGCATGTGGTCTCTTATGTGTCCTCATCG 110932 ||||| ||||||||||| ||| | || | ||||| || ||||| |||||| Sbjct 333321 CTTATTTATGAAACGTGT---AGACACTGATTCTGTCTGGTCACTGATGTGCCCTCATAA 333377 Query 110933 TTCTCCTGGTCTATCTGA-TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATG 110991 | ||| || |||| || ||| | || ||||||| ||| | || || |||||||| | Sbjct 333378 GTGTCCAGGATTATCGGACTGT-TGGGGCGAAGAGTTCGAAAAACTCTATGAAAAATACG 333436 Query 110992 AAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTG 111051 || ||||| || | | ||||| || || ||| |||| ||||| | ||| || Sbjct 333437 AAGCCGAAGGTAAATATAATAAACAGATACCGGCTAGAGAAGTTTGGCGCGCAATTGTTA 333496 Query 111052 AATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT 111095 || ||| |||| ||| ||||||||| |||| || ||| Sbjct 333497 TCTCGCAAATTGAGGTTGGTGTTCCTTATATGCTGTACAAGGAT 333540 >seq3057 Length=41470 Score = 111 bits (122), Expect = 4e-19 Identities = 124/163 (76%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| |||| | |||||| | ||||| |||| ||||||||| |||||||| ||||| Sbjct 2857 GATTTGGTTATTTTCAATCGTCAACCTACACTCCATAAAATGAGTATGATGGGTCATAGG 2916 Query 305384 GTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAG-TGCTTGTACGCCTTATAA 305442 || ||||||||| | | | || || || | ||| | || ||| | | || || || Sbjct 2917 GTTAAAGTATTACCGTGGTCCACTTTCCGGATGAATCTCAGCTGCACCT-CACCCTACAA 2975 Query 305443 TGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||| ||||||||||| |||||||||||| |||| ||||||||| Sbjct 2976 TGCCGATTTTGATGGGGATGAAATGAATTTGCACGTACCTCAA 3018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186742091918650