Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq830 120 2e-22 >seq830 Length=194395 Score = 120 bits (132), Expect = 2e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || |||||||| |||||| || || || |||||||| || || || || | | Sbjct 123308 ACGCAAAACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTCCTGCC 123367 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||| ||||| ||||||||||||||||| ||||||||| | || | ||||| || Sbjct 123368 ATCTTCCAACTGTTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGGATCCCTTCCTT 123427 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| || | | |||| || | ||||| | || || || | |||| Sbjct 123428 GTCTTGAATCTT-AGCCTTGACATTTTCAATAGTGTCAGAAGGCTCAACCTCCAAAGTGA 123486 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||||||| ||||| ||||| ||||| ||||||||| Sbjct 123487 TGGTTTTACCAGTTAAGGTTTTCACAAAAATCTGCATA 123524 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | ||||||||| ||||| || || || || || || |||||||| || || Sbjct 122613 CCTCCACGCAAACGTAAAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGAC 122672 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || |||||||| || || |||||||||||||||||||||||| | || Sbjct 122673 AGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAAACGCTGCTGATCTGGTGGA 122732 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||||| | || ||| | || | || || | |||||| Sbjct 122733 ATTCCTTCCTTATCCTGGATTTT-GGCTTTAACGTTCTCGATTGTATCAGACGGTTCCAC 122791 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || || |||||||| |||||||||||| Sbjct 122792 CTCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCATA 122840 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||||||||| | ||| || ||| ||| || || ||||| ||||| || Sbjct 122840 ACCACCACGCAGACGTAACACTAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCCGA 122899 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | || |||||||| || || |||||||||||||| ||||| ||| | || Sbjct 122900 CAAAGTTCTACCATCCTCCAATTGCTTACCCGCAAAAATCAAACGTTGCTGGTCTGGAGG 122959 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| | | || | || | ||||| || |||| Sbjct 122960 AATACCTTCTTTGTCTTGAATTTT-AGCCTTTACGTTCTCAATTGTGTCCGATGGCTCCA 123018 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || || ||||| || || |||||||| Sbjct 123019 CCTCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTCACGAAAATCTGCAT 123067 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| || ||| || ||||| |||||||| || || Sbjct 124454 ACCACCGCGAAGACGCAATACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAGTCCGA 124513 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || |||||||| || || || || |||||||| || |||||| | || Sbjct 124514 CAGAGTCCTGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGG 124573 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | ||||| ||||| ||||| ||| | ||| ||| ||||| || ||| | Sbjct 124574 GATTCCTTCCTTGTCTTGGATTTTGGCTTTGA-CATTTTCAATTGTGTCAGATGGTTCAA 124632 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || || || ||||| ||||||||||||||| Sbjct 124633 CTTCCAAGGTAATGGTTTTTCCAGTCAAGGTTTTAACAAAGATCTGCATA 124682 Score = 109 bits (120), Expect = 4e-19 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || |||| | ||| || |||||||||| || || ||||| || Sbjct 123057 AAAATCTGCATTCCGCCTCGAAGACGCAAAACCAAATGTAATGTAGATTCCTTTTGGATA 123116 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| || | || | | || ||||| ||||| || || || |||||||| ||| Sbjct 123117 TTGTAATCAGACAAGGTCCTGCCATCCTCCAACTGTTTACCTGCGAAGATCAAACGTTGC 123176 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTC 33689 |||||| | || | |||||| ||||| |||||| || ||| | ||| || || Sbjct 123177 TGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTGGCCTT-AACGTTCTCAATTGTATC 123235 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || ||| || || | ||||| ||||| || || || ||||||||||| || ||||| Sbjct 123236 GGATGGTTCAACTTCTAAGGTGATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 123295 Query 33750 A 33750 | Sbjct 123296 A 123296 Score = 107 bits (118), Expect = 1e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || |||||||| |||||| || || || || |||||||| || || || | | Sbjct 123536 ACGCAATACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGACAGAGTCCTGCC 123595 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||||||||| ||||| || || ||||| ||||||||| | || | ||||| || Sbjct 123596 ATCTTCCAATTGTTTACCGGCGAAGATTAAACGTTGCTGATCTGGGGGGATTCCTTCCTT 123655 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||||| | | || | || | || ||| || ||| || || | |||| Sbjct 123656 GTCTTGGATTTT-AGCCTTGACGTTTTCAATTGTATCGGATGGTTCAACTTCCAAAGTGA 123714 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | ||||| || || || ||||| || |||||||||||| Sbjct 123715 TAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCATA 123752 Score = 105 bits (116), Expect = 4e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || || ||||| || || || ||||| |||||||| || || || || | | Sbjct 124694 ACGCAATACTAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCCGACAGAGTCCTGCC 124753 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||||||||| || || || |||||||| |||||||| | || | || ||||| Sbjct 124754 ATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGTGGGATTCCCTCTTT 124813 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| || ||| |||| || | ||| || | || || || | |||| Sbjct 124814 GTCTTGAATCTTAGCCTTC-ACATTTTCAATGGTATCAGAGGGCTCAACCTCCAAAGTGA 124872 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||||||| ||||| ||||| |||||||||||||| Sbjct 124873 TGGTTTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 124909 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || |||||||| || || || ||||| |||||||| || || Sbjct 123998 ACCACCACGAAGACGCAATACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGA 124057 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || ||||||||||| || || || |||||||| ||||||||| | || Sbjct 124058 CAGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGAGG 124117 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||||| | | || | || | ||||| || ||| | Sbjct 124118 GATTCCTTCCTTGTCTTGGATTTT-GGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAA 124176 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || || || ||||| || |||||||||||| Sbjct 124177 CTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTGCATA 124226 Score = 102 bits (112), Expect = 5e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || || ||||| ||||| || || || |||||||| ||||| || || | | Sbjct 124238 ACGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCC 124297 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||||||||| || ||||| |||||||| ||||||||| | || | ||||| || Sbjct 124298 ATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTT 124357 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||||| | | || | || | ||||| || ||| || || | || | Sbjct 124358 GTCTTGGATTTT-GGCCTTTACGTTTTCAATTGTGTCAGATGGTTCAACTTCCAAGGTAA 124416 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | ||||| || || || ||||| || |||||||||||| Sbjct 124417 TAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCATA 124454 Score = 95.1 bits (104), Expect = 8e-15 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 33568 ATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGC 33627 || |||||||| || || || | | || ||||||||||||||||| || || ||||| Sbjct 123816 ATATTGTAATCAGACAGAGTCCTGCCATCTTCCAATTGTTTTCCGGCGAAGATTAAACGT 123875 Query 33628 TGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGT 33686 ||||||||| | || | ||||| ||||| ||||| | | ||| | || | || Sbjct 123876 TGCTGATCTGGGGGGATTCCTTCCTTGTCTTGGATTTT-GGCCTTAACGTTCTCAATTGT 123934 Query 33687 GTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 ||| || ||| || || | ||||| ||||| || || || ||||| || |||||||| Sbjct 123935 ATCGGATGGTTCAACTTCTAAAGTGATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTG 123994 Query 33747 CATA 33750 |||| Sbjct 123995 CATA 123998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328685371728000