Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq830 129 1e-24 seq4623 89.7 1e-12 >seq830 Length=194395 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || || |||||||| ||| ||||||||| | ||| Sbjct 124438 AAAACCTTGACTGGAAAAACTATTACCTTGGAAGTTGAACCATCTGACACAATTGAAAAC 124379 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || ||||| || ||||||||| || || ||| | | ||||| Sbjct 124378 GTAAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGATCAGCAACGTTTGATCTTT 124319 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||||||||| |||||| || |||| |||||| ||||||| || ||| Sbjct 124318 GCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCCGACTACAACATCCAGAAGGAATCT 124259 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || | || ||| | ||||| Sbjct 124258 ACTCTCCATTTAGTATTGCGTCTTCG 124233 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || ||||| ||||||||||| || || ||||||| Sbjct 123520 CAGATTTTTGTGAAAACCTTAACTGGTAAAACCATCACTTTGGAGGTTGAGCCTTCTGAC 123461 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||||||||| || ||||| || || || ||| Sbjct 123460 ACTATTGAAAATGTCAAGGCTAAGATTCAAGACAAGGAAGGGATCCCCCCAGATCAGCAA 123401 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || || ||||| || |||||||||||||| |||||| || | || |||||| || Sbjct 123400 CGTTTGATTTTTGCCGGTAAACAGTTGGAAGATGGCAGGACTCTGTCTGACTACAACATC 123341 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || ||||| || | |||||| | ||||| Sbjct 123340 CAGAAGGAATCCACTCTCCATTTGGTTTTGCGTCTTCG 123303 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| |||||||||||||| ||| || || ||| | ||| Sbjct 123736 AAAACCTTGACTGGAAAAACTATCACTTTGGAAGTTGAACCATCCGATACAATTGAAAAC 123677 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || |||||||| || || ||| | | |||||| Sbjct 123676 GTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCCCCAGATCAGCAACGTTTAATCTTC 123617 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || ||||||||||| |||||| || | |||||||| ||||||| || || Sbjct 123616 GCCGGTAAACAATTGGAAGATGGCAGGACTCTGTCTGATTACAATATCCAGAAGGAATCC 123557 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || | || ||| | ||||| Sbjct 123556 ACTCTCCATTTGGTATTGCGTCTTCG 123531 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || ||||||||||| ||| ||||||||| | ||| Sbjct 124210 AAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCATCTGACACAATTGAAAAC 124151 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| || |||||||| || || ||| | | |||||| Sbjct 124150 GTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCTCCAGATCAGCAACGTTTGATCTTC 124091 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||||||||| |||||| || | || |||||| |||| || || ||| Sbjct 124090 GCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCAGACTACAACATCCAAAAGGAATCT 124031 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| | || ||| | ||||| Sbjct 124030 ACCCTTCATTTGGTATTGCGTCTTCG 124005 Score = 118 bits (130), Expect = 3e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || |||||||| || || |||||||| ||| |||||| Sbjct 124678 CAGATCTTTGTTAAAACCTTGACTGGAAAAACCATTACCTTGGAAGTTGAACCATCTGAC 124619 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||| ||| || ||||| || |||||||| || || || Sbjct 124618 ACAATTGAAAATGTCAAAGCCAAA-ATCCAAGACAAGGAAGGAATCCCACCAGATCAACA 124560 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | |||||||| || ||||| ||||||||||| |||||| || | || |||||| | Sbjct 124559 ACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCAGGACTCTGTCGGACTACAACAT 124500 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || || || ||||| | || ||| | ||||| Sbjct 124499 TCAAAAGGAATCCACCCTTCATTTGGTATTGCGTCTTCG 124461 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || ||||| ||||||||||| || || ||||| Sbjct 124906 CAGATCTTTGTGAAAACCTTAACTGGTAAAACCATCACTTTGGAGGTTGAGCCCTCTGAT 124847 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||||||||| ||||| ||||| || || ||| Sbjct 124846 ACCATTGAAAATGTGAAGGCTAAGATTCAAGACAAAGAGGGAATCCCACCTGATCAGCAA 124787 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| || || || ||||||||||| |||||| || | || |||||| || Sbjct 124786 CGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCGGACTACAACATC 124727 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||| ||||| | || ||| | ||||| Sbjct 124726 CAAAAGGAATCTACACTTCATTTAGTATTGCGTCTTCG 124689 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 ||||| | || ||||| || ||||||||||| |||||| ||||| ||| |||| | | Sbjct 122824 AAAACTTTGACGGGAAAGACTATCACTTTGGAGGTGGAACCGTCTGATACAATCGAGAAC 122765 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||| || || || || ||||||||| || || || | | || || Sbjct 122764 GTTAAAGCCAAA-ATCCAGGATAAGGAAGGAATTCCACCAGATCAGCAGCGTTTGATTTT 122706 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| ||||||||||| || ||| || | || |||||| ||||||| || || Sbjct 122705 TGCTGGCAAGCAATTGGAAGATGGCAGAACTCTGTCTGACTACAACATCCAGAAGGAATC 122646 Query 206364 TACTCTTCACCTTGTTTT 206381 || |||||| | ||||| Sbjct 122645 AACCCTTCACTTGGTTTT 122628 Score = 107 bits (118), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||| || ||||||||||| ||||| || |||||| | || Sbjct 123052 AAAACTTTGACGGGAAAGACTATCACTTTGGAGGTGGAGCCATCGGACACAATTGAGAAC 122993 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || |||||||| |||||||| ||| || ||| ||| | | || || Sbjct 122992 GTAAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAGCAACGTTTGATTTTT 122933 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||| ||||| || |||||| | ||||| ||| | ||||| ||||| Sbjct 122932 GCGGGTAAGCAATTGGAGGATGGTAGAACTTTGTCGGATTATAACATTCAGAAGGAGTCC 122873 Query 206365 ACTCTTCACCTTGTTTT 206381 || || || || || || Sbjct 122872 ACCCTCCATCTAGTGTT 122856 Score = 96.9 bits (106), Expect = 8e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 ||||| | || |||||||| |||||||| ||||| ||| || || ||| | || | | Sbjct 123982 AAAACATTGACTGGAAAAACCATCACTTTAGAAGTTGAACCATCCGATACAATTGAGAAC 123923 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||| || ||| || ||||| || |||||||| || || ||| | | ||||| Sbjct 123922 GTTAAGGCCAAA-ATCCAAGACAAGGAAGGAATCCCCCCAGATCAGCAACGTTTAATCTT 123864 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 ||||||||| || ||||||||||| |||||| || | |||||||| Sbjct 123863 CGCCGGAAAACAATTGGAAGATGGCAGGACTCTGTCTGATTACAA 123819 >seq4623 Length=1795199 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 101531 GCAGCTTCAGCCACCTTCCGGAGGTAATTGTGCCTCTTCTCCTTTCTTAATCTCTCGAAA 101590 ||| ||||||||||||||| || ||||||||||| ||| ||| | | | | ||||| Sbjct 1683739 GCAACTTCAGCCACCTTCCTGACGTAATTGTGCCGCTTTTCCATACGAAGACGGGCGAAA 1683798 Query 101591 CGAAGGGCAGATTGTCCTCCCCTCCCGTGTTTCTTTGGCAAAGAGACGTCAAAATTATGA 101650 || || ||||| || ||||| || ||||| ||||| |||| | |||| || || || Sbjct 1683799 CGTAGCGCAGACTGACCTCCTCTGCCGTGCTTCTTCGGCAGATCGACGGTGAATTTGTGC 1683858 Query 101651 AGAATTTTCTTGGTGTTCCCAGAGAGAGTCGCGAAAAGAGCAGAAGAACCGTCAAGAATA 101710 |||| || ||||| || || || | ||||| || | |||||| | | | Sbjct 1683859 AGAACTTCGCGTGTGTTTCCCTGCAGTGTACCAAAAAGGGCTCCATTACCGTCCATGACA 1683918 Query 101711 ATAAATCCGAAT 101722 || ||||||||| Sbjct 1683919 ATGAATCCGAAT 1683930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181750389332650