Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1636 131 2e-25 seq1314 113 4e-20 seq830 100 3e-16 seq429 93.3 4e-14 seq4450 89.7 5e-13 seq1908 82.4 7e-11 >seq1636 Length=121147 Score = 131 bits (144), Expect = 2e-25 Identities = 231/336 (69%), Gaps = 3/336 (1%) Strand=Plus/Plus Query 51543 ATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCGGA 51602 || ||||||| |||||| ||||||| |||| | ||| || ||||||||||| || Sbjct 2791 ATGCCGATGACGCCGCAAGCGAGACGAGCGCCGGCGTTTCCTGTGGTCTTGCTGAGTTCG 2850 Query 51603 TGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGACG 51662 || || || | |||||| | | ||||| || || || |||| || | || | Sbjct 2851 TGTCCGCCCGCTCCCATGTCGTCGGGATCGGCGTGGACGACGAGGGTGCGTCCCAGGATG 2910 Query 51663 CTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGTTG 51722 || || | |||||| | || ||| | |||||| || ||| || || | ||||| Sbjct 2911 CTGTTGTTGCCGAACAACGAGATCTCCTTGTCGGAGATGGACACCATGGCGACGCCGTTG 2970 Query 51723 GACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCG 51782 | ||||| || ||||||| ||| |||||||| || | | | | | ||| || Sbjct 2971 CTACCG---GCCTCTACGTTGCCCAGGTCACCGACGTGACGTACGTCGGAGGTGGGACCG 3027 Query 51783 CCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTG 51842 ||||| || |||| || |||||||| || ||||| |||| |||||| || || Sbjct 3028 CCGTGATCCTTGCCCTGCGGATTGAAGTGGGGCCCGGCCGAGATGCAACCGTTGGTGTTG 3087 Query 51843 TCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878 || ||||| ||||| | |||||||||||| |||||| Sbjct 3088 TCACCGAACTCGTGGATGTGGAATCCGTGGAGGCCC 3123 >seq1314 Length=49468 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | ||||| || || |||||||||||| | ||| || | Sbjct 22020 CGCAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCA 22079 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| ||||||| |||| | ||| || |||||||| || || || ||||| Sbjct 22080 TCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGGATTCCCTCTTTG 22139 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | ||| | |||||||| ||||| || |||| || | Sbjct 22140 TCCTGGATCTTGGCCTTCACATTTTCGATAGTATCGGAGGGCTCGACCTCGAGGGTGATG 22199 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| || || ||||| | |||||| ||||| Sbjct 22200 GTCTTACCCGTTAGGGTTTTCACGAAAATTTGCAT 22234 >seq830 Length=194395 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||||||||||| | || || ||||| || ||||| || || ||| | | Sbjct 123081 CGCAAAACCAAATGTAATGTAGATTCCTTTTGGATATTGTAATCAGACAAGGTCCTGCCA 123140 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | ||||||||| | |||| | ||| || ||||||||||| || ||||| || Sbjct 123141 TCCTCCAACTGTTTACCTGCGAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTG 123200 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | || | ||||||| || || ||||| | || | Sbjct 123201 TCTTGAATTTTGGCCTTAACGTTCTCAATTGTATCGGATGGTTCAACTTCTAAGGTGATG 123260 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| ||||||| ||||| ||||| Sbjct 123261 GTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 123295 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || |||||||| || | | |||| || || || ||||||||||| || || Sbjct 122618 ACGCAAACGTAAAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGACAGAGT 122677 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | |||||| | || || || | | | || | |||||| |||||||| || || || Sbjct 122678 TCTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCC 122737 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| ||||| ||| | | || | ||||| | ||| ||||| || | Sbjct 122738 TTCCTTATCCTGGATTTTGGCTTTAACGTTCTCGATTGTATCAGACGGTTCCACCTCCAA 122797 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || |||| |||||||| ||| |||||||| Sbjct 122798 AGTGATAGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 122839 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||||||||| | | || || || || ||||||||||| || || | | Sbjct 123309 CGCAAAACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTCCTGCCA 123368 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||||||||| | | || | ||| || |||||||| || || ||||| || Sbjct 123369 TCTTCCAACTGTTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGGATCCCTTCCTTG 123428 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || || | | ||| | ||| || | ||||| || || | || | Sbjct 123429 TCTTGAATCTTAGCCTTGACATTTTCAATAGTGTCAGAAGGCTCAACCTCCAAAGTGATG 123488 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| | ||||| | ||||||||||| Sbjct 123489 GTTTTACCAGTTAAGGTTTTCACAAAAATCTGCAT 123523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | || || ||||| ||||||||||| || || | | Sbjct 124011 CGCAATACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGACAGAGTCCTGCCA 124070 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||| | |||| | ||| || ||||||||||| || ||||| || Sbjct 124071 TCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTCCTTG 124130 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | ||| | || || | || || ||||| | || | Sbjct 124131 TCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCCAAAGTAATG 124190 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| ||||| | ||| |||||||| Sbjct 124191 GTTTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 124225 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | | || || ||||||||||||||||| || || | | Sbjct 124467 CGCAATACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAGTCCGACAGAGTCCTGCCA 124526 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || ||||| | |||| | ||| ||||||||||| || || ||||| || Sbjct 124527 TCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTG 124586 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | || || | || || ||||| | || | Sbjct 124587 TCTTGGATTTTGGCTTTGACATTTTCAATTGTGTCAGATGGTTCAACTTCCAAGGTAATG 124646 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| ||||| | || |||||||| Sbjct 124647 GTTTTTCCAGTCAAGGTTTTAACAAAGATCTGCAT 124681 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || ||||| | | || || || || |||||||||||| || || | | Sbjct 124239 CGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCA 124298 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||| | | |||| | ||| || ||||||||||| || ||||| || Sbjct 124299 TCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTG 124358 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | ||| | || || | || || ||||| | || | Sbjct 124359 TCTTGGATTTTGGCCTTTACGTTTTCAATTGTGTCAGATGGTTCAACTTCCAAGGTAATA 124418 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| ||||| | ||| |||||||| Sbjct 124419 GTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCAT 124453 >seq429 Length=41586 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || ||||||||||| || ||||| ||| ||||| || ||||||| Sbjct 1143 GATTCCTTCTGGATGTTGTAGTCCGACAGAGTACGTCCATCCTCGAGTTGCTTACCGGCG 1202 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| || |||||||| || || || || || || || || |||| Sbjct 1203 AAGATAAGACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTCACA 1262 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| ||||| || || | || | || ||||| |||| ||||||| Sbjct 1263 TTCTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAAAGTTTTT 1322 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 1323 ACGAAAATCTGCAT 1336 >seq4450 Length=177458 Score = 89.7 bits (98), Expect = 5e-13 Identities = 280/425 (66%), Gaps = 13/425 (3%) Strand=Plus/Minus Query 46850 AGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGG 46909 ||| || || | || || || |||||||| ||| | || || | | || | ||||| Sbjct 24444 AGTGGAGGGTATTTTCTTCTCCGGCAGTTTCGCCTCGATCTTCTGGCTGAAGAAGAAAGG 24385 Query 46910 CATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACAC 46969 | ||||| || || || ||| |||||||||||||| | || |||| | ||| Sbjct 24384 ATTGATGCCCGGTCTCACTTTCTCCAACGAGTTGATCTCCAGGGATGAAGCGATGCACTG 24325 Query 46970 GGACTTTGCGTGTCTCTATTACAAGACGCG-CGTGAATGAGAAATTAAACTCGGACACGA 47028 | || |||||| | | ||| | || |||| | || | | | ||| | | Sbjct 24324 CAAATTCGCGTGTTTGATGTTTAAG-CACGTCGTGCAGAAGCCTTCAGA---GGAGAGGG 24269 Query 47029 TCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGC 47088 || || ||| | || || || |||| |||||| |||||||| |||| | || |||| Sbjct 24268 TCAAGAACATCATCAGAGATGCCGTGAAGATCGAACAGGAGTTTCTTACCGAAGCCCTGC 24209 Query 47089 CCGTCGCCTTGCTGGGCATGAAC-GCACAGTCTATGTGCGAATATATTGAGTTTGTGGCG 47147 | || | ||| | |||||||| || | | |||||| ||||| || || || ||||| Sbjct 24208 CTGTATCTTTGATCGGCATGAATTGCGGACT-TATGTGTGAATACATCGAATTCGTGGCT 24150 Query 47148 GATCGTCTGTTGGTGCAGCTCGGACAACCG---AAATATTTTAATGCTCGTAATCCGTTT 47204 || ||| ||| ||| | | || || |||| | | | | || ||||| || Sbjct 24149 GACAAGCTGCTGG--CAGATTTGGGAATCGCTGAAATCTACCACT-CGCGAAATCCCTTC 24093 Query 47205 GAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGA 47264 | |||||| | ||||| ||| | || || ||||||||||| ||||| || ||| ||| Sbjct 24092 AATTTTATGGATAACATATCGATAGACGGAAAAACCAATTTCTTCGAAAAGAAAGTTGGA 24033 Query 47265 GAGTA 47269 || || Sbjct 24032 GAATA 24028 >seq1908 Length=44741 Score = 82.4 bits (90), Expect = 7e-11 Identities = 170/246 (69%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 148147 AAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCG 148206 |||||||| || | || || || | | || || || || || | || ||||| || Sbjct 4783 AAAAAACATGAGCTCAACTGTGGCTTAGGAGTGCCTGCAGAAAATAATGTTGGACTAGCA 4724 Query 148207 TGCGTAAACAATTTTT--GACTCATCATGCGATACGTCTCAATAGC-GTCTTCGATGTCG 148263 || ||||| | |||| ||| || ||| || |||||||| || | ||| ||||| Sbjct 4723 TGGGTAAAATACTTTTCAGACATATAATGGTAT--GTCTCAATTGCAGACTTA-ATGTCC 4667 Query 148264 TCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAA-CTTG 148322 || || || || |||| || || | ||| ||||||||||| |||| || ||| |||| Sbjct 4666 TCTCCATGTATACCCACAGCTACTCTCATCAGCATGTGCTGAGGTCTCTCAACAATCTTG 4607 Query 148323 ATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATC 148382 || || ||||| | | |||| || || | || ||| |||||||||| ||||| Sbjct 4606 -TTATTAATCTTCAACAAATATGACTTCTCCAAAGTCTTGAAACCAAAGTAATTGTATGA 4548 Query 148383 AAAATC 148388 |||||| Sbjct 4547 AAAATC 4542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476583496974000