Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq4241 138 1e-27 seq830 96.9 3e-15 seq1636 93.3 4e-14 >seq4241 Length=192509 Score = 138 bits (152), Expect = 1e-27 Identities = 475/727 (65%), Gaps = 18/727 (2%) Strand=Plus/Plus Query 136974 ATGCTGATTTACTACTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGT 137033 ||| ||||| | ||| || |||| || | | ||||||| || || | ||||| || Sbjct 51976 ATGATGATTGATAACTGGAAATTCTCCGGCTTGCACTCTACGAGTATAAATGTTACTTGT 52035 Query 137034 GAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTA 137093 | |||| ||||| || |||||||| || ||||| || ||||| | ||||| ||||| Sbjct 52036 GTACGGTTCGAAGGACTCGTTGTTTCCTAAAATTTGGGCAGTGCTAGCTGTTGGCATAGG 52095 Query 137094 AGCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCA 137153 || | | | ||||||| | ||||| ||| | || || ||| | | ||| Sbjct 52096 TGCAAGAAGGAGAGAATTCCTGATTCCGTGCTTGGCGATTTTTTCCTTTAAGGCGGCCCA 52155 Query 137154 GTTCCACAGATTGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACT 137213 | ||| || || | | | |||| |||||||| ||| | || | || ||| || Sbjct 52156 ATCCCATAG---GTCTGTTGGTGTTACATTCCACATATCGTATTGGAGAATTCCCTTGCT 52212 Query 137214 TGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTC-GCCAGTTCAATACTCT 137272 || ||| | || ||||| ||| | ||| | | |||| || | |||| ||| Sbjct 52213 GGCCGGAGATCCTTTATAAGTTGAATACGGTCCAT-CTCTTTCAGCGATTTCACAGCTCG 52271 Query 137273 GGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTT 137332 ||| || |||||||||| ||| ||| | || | | ||| || | | ||||||| Sbjct 52272 TTTCTAAAGCTCCATAGTAAAGAGTCTCGAATATCTGTACATTTAACTTTTGTGCTTCTT 52331 Query 137333 GGCTGTCGTAGGGCATA-TC--CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGA 137389 ||| ||| | || || || ||| ||| |||||||| || | || || ||||||| Sbjct 52332 CGCTTTCGAACGGAATCCTCATCAAGATA---AAAGCATCGGCCAAACCCTGTATACCGA 52388 Query 137390 TACCGATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTTG 137449 |||| || || | ||| | | |||||| || ||| | | ||||| |||| Sbjct 52389 TACCAATTGGACGATGTCTCATATTTGAGTTTCTAGCTTCAGGCACAGGATAGTAGTTGA 52448 Query 137450 CGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGA 137509 ||| || || | || ||||| ||||||| | | ||| | || | || || Sbjct 52449 TGTCGATGATCTTGTTCAGATTTCTAGTAACTAGTTTGGTGAGTTCCTTCAGTTTGATGA 52508 Query 137510 AATCGAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGC 137569 ||||||| |||| ||| || ||| |||| | || |||||||| || ||||| || | Sbjct 52509 AATCGAATGATTTA-TCTGGTT-TTA-CAAACATGTTAACGGCAATTGACGCTAAATTAC 52565 Query 137570 ATACGGCCGTTTCTGTATTGTCGC--TGTATTGTACAATTTCGGCGCAAAGATTGCTGTT 137627 | ||||| ||||| || | ||| |||||| || ||||| | ||| || || | | Sbjct 52566 AGACGGCAGTTTC-GT-CGGGCGCAGTGTATTCCACTATTTCTGTGCACAGGTTCGAGCT 52623 Query 137628 TCGGATCACTCCCAAATTCTTTTGATTGTTTTTCTCGTTGACGTGATCTTTATATATCAT 137687 | ||| |||||||||| ||| ||| | ||| |||| | ||| || || ||||| Sbjct 52624 TTTGATTGTCCCCAAATTCTGTTGGTTGCTCTTCGAGTTGCAGGCATCCTTGTACATCAT 52683 Query 137688 ATACGGA 137694 || ||| Sbjct 52684 GTAAGGA 52690 >seq830 Length=194395 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| || || |||||| | ||||| | ||||| ||| | | Sbjct 123295 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATCACCTTAGAAGTTGAACCATCC 123236 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || || |||||| || || || ||||| || || |||||| Sbjct 123235 GATACAATTGAGAACGTTAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAG 123176 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | || | || || ||||| | || |||| || | |||| | |||||| Sbjct 123175 CAACGTTTGATCTTCGCAGGTAAACAGTTGGAGGATGGCAGGACCTTGTCTG--ATTACA 123118 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| ||||| ||||| || | ||||| || || Sbjct 123117 ATATCCAAAAGGAATCTACATTACATTTGGTTTT 123084 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| || || |||||| | ||||| | ||||| ||| | | Sbjct 123751 ATGCAGATCTTCGTTAAAACCTTGACTGGAAAAACTATCACTTTGGAAGTTGAACCATCC 123692 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||||| || || || || || || || |||||| Sbjct 123691 GATACAATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCCCCAGATCAG 123632 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | || ||| |||||| | ||||||| || | | | ||||||||| Sbjct 123631 CAACGTTTAATCTTCGCCGGTAAACAATTGGAAGATGGCAGGACTCTGTCTGATTACAAT 123572 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || || || |||||||| | ||||| || || Sbjct 123571 ATCCAGAAGGAATCCACTCTCCATTTGGTATT 123540 >seq1636 Length=121147 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 105771 CACGGCTTTCATGTACACGAATTCGGCGACACGAGCAACGGTTGCACGTCTGCCGGCGAG 105830 ||||| || || | ||||| ||||| |||| | ||||||||||| || ||||| Sbjct 3116 CACGGATTCCACATCCACGAGTTCGGTGACAACACCAACGGTTGCATCTCGGCCGGGCCC 3057 Query 105831 CATTTCAACCCTACGGGCATGGCTCACGGCGCGCCCAGCTCTGCCGTTCGTCACGTCGGT 105890 || ||||| || ||||| || |||||||| |||| ||| | ||| |||||||||||| Sbjct 3056 CACTTCAATCCGCAGGGCAAGGATCACGGCGGTCCCACCTCCGACGTACGTCACGTCGGT 2997 Query 105891 GATCTTGGCAA 105901 || || ||||| Sbjct 2996 GACCTGGGCAA 2986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445068528888000