Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4450 161 8e-35 seq1686 86.0 5e-12 >seq4450 Length=177458 Score = 161 bits (178), Expect = 8e-35 Identities = 369/548 (67%), Gaps = 7/548 (1%) Strand=Plus/Minus Query 43702 TGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTC 43761 ||| ||||| ||||| ||| ||||||| ||| | ||||| || |||| |||| || Sbjct 24894 TGTAGTGTTCCCAATCGTCTATAATGACATGTGGAAGATGTATGAACAAGCTGAGGCCTC 24835 Query 43762 ATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAA 43821 |||||||| | | |||||||||||| | || |||| | ||||| | | | Sbjct 24834 ATTTTGGAAGGTTCATGAAGTTGATTTGTCGAAGGACTACAAAGATTGGGAAAAAATGAC 24775 Query 43822 ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGAT 43881 || | || |||||||| || | || ||||| ||||||||||| || || || Sbjct 24774 TTCAAATGAGAAACATTTCATCAAGTATGTGTTGGCATTTTTTGCTGCCTCTGATGGTAT 24715 Query 43882 AGTCAATGAAAATTTGGTTAGTCGGTTTGCG-CAAGAAGTTCAATTACCAGAAGCACGAT 43940 ||||||||||| ||| ||| | || | ||||||| ||| | || ||| || Sbjct 24714 TGTCAATGAAAACCTGG-TAGAGAGATTCAGTAAAGAAGTACAAGTTATTGAGGCAAAAT 24656 Query 43941 GTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGA 44000 || ||||| | || |||||||| || || || || || ||||||||| | ||| Sbjct 24655 TCTTCTATGGCATGCAGATTGCCATGGAGAACATACACTCACTGATGTACAGTTTGTTGA 24596 Query 44001 TAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAAC-A 44059 |||| || || |||||||||| | | ||||| | | ||||||| || ||||| | Sbjct 24595 TAGACACTTATATCAAAGATGTGAAGGAGAAAAGTTTTCTTCTTAATGCAATTGAAACTA 24536 Query 44060 GTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA--TAAATTCAA-ATGAT 44116 | | |||| | ||| | || || || ||||| | || |||| | | |||| | | Sbjct 24535 TTCCATGCG-TGAAAAAGAAGGCTGATTGGGCGTTAAATTGGATTTCCAGTCAAGAAGCG 24477 Query 44117 TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCG 44176 | || || ||| | | ||||| ||||||| ||||| || |||||||| || || Sbjct 24476 ACATTCGGTGAAAGGGTCGTCGCTTTTGCAGCAGTGGAGGGTATTTTCTTCTCCGGCAGT 24417 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 || || | || || ||| | ||||| ||| |||||||| || | || || || || Sbjct 24416 TTCGCCTCGATCTTCTGGCTGAAGAAGAAAGGATTGATGCCCGGTCTCACTTTCTCCAAC 24357 Query 44237 GAGTTAAT 44244 ||||| || Sbjct 24356 GAGTTGAT 24349 >seq1686 Length=193473 Score = 86.0 bits (94), Expect = 5e-12 Identities = 181/269 (67%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || || || || || ||| | || | | ||||| || || | || |||| ||| Sbjct 151776 CCGAAGATCGTCAACGGACCTCAGATTCTGGACAAATACGTGGGCGAGTCCGAAGCAAAC 151717 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 || || | ||||| || || || ||||| || || || || || ||| ||| | Sbjct 151716 GTGAGAAGGTTGTTCGCGGATGCCGAAGAGGAGCAGAAGCGCGCCGGATCCAATAGTGGT 151657 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG---T 19605 | |||||||| || | |||||| | || || ||||| ||| |||||||| | | Sbjct 151656 CTTCACATTATCATCTTTGATGAAATCGATGCGATCTGCAAGTCTAGAGGTTCCGTCGCT 151597 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | || || || || ||||| ||||| ||||| | || || ||| | || ||||| Sbjct 151596 GGCAACACGGGCGTTCACGACACCGTTGTGAATCAGTTGCTCTCGAAAATCGATGGTGTC 151537 Query 19663 AACCAACTGAATAATATTTTAGTTATTGG 19691 | ||| |||| ||||||||||| || || Sbjct 151536 GAGCAATTGAACAATATTTTAGTCATCGG 151508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397433475423250