Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1908 138 1e-27 seq4241 118 1e-21 seq4643 111 2e-19 seq1791 87.8 2e-12 >seq1908 Length=44741 Score = 138 bits (152), Expect = 1e-27 Identities = 903/1429 (63%), Gaps = 49/1429 (3%) Strand=Plus/Plus Query 104444 ATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGC--CAATAAAT 104501 || ||||||| ||||| || ||||| || | || ||| || | ||||| || || Sbjct 4845 ATTTCAAAGTCTGCTGGTGGCATTGGAATTAATATTCATAATATTAGAGCAGCAGGAA-- 4902 Query 104502 CTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTA 104561 | | ||| || ||| ||| |||| ||||| ||| | || ||| | || || | Sbjct 4903 CACCAATTATTGGTACAGGCGGTAAATCTGATGGAATTGTGCCTATGTTGAAAGTGTTCA 4962 Query 104562 ACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTCGAAAGGGATCTATCGCAGTCTATC 104621 || |||||| | || ||||| |||| ||| | ||| || || | ||||| ||| Sbjct 4963 ACCATACAGCGAGGTACGTAAACCAAGGTGGTAGACGACCTGGTGCTGTTGCAGTGTATT 5022 Query 104622 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA----GGT 104677 | ||||| ||||| || || || ||||| ||| |||| | | || || || Sbjct 5023 TAGAGCCTTGGCATGCTGACATTATGGAATTC-TTGAATC---TAAAAAAGAATACTGGA 5078 Query 104678 GACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATG 104737 | || |||| | | | ||| | || | ||| | ||||| ||||| | || ||| Sbjct 5079 AATGAAGAGGAAAGAGCCAGAGATTTGTTTTATGCTTTGTGGATACCAGACTTATTTATG 5138 Query 104738 AAGAGAGTTGAG---GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGT 104794 || | || || || |||| | ||||| || | || || | ||| || || Sbjct 5139 AAACGTGTAGACACTGATAGTGTC---TGGTCACTGATGTGCCCTCATAAGTGTCCAGGA 5195 Query 104795 CTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGG 104853 | || || ||| | ||| || ||||| ||| || || ||| ||||| | ||||| Sbjct 5196 TTATCGGAATGCTG-GGGCGAAGAGTTCGAAAAGCTCTATGAAAAATACGAAGCTGAAGG 5254 Query 104854 TCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAAC 104913 | | | | || ||| || || ||| || ||| | | || |||| Sbjct 5255 TAAATATAACAAACAGATACCGGCTAGAGAAGTTTGGCGCGCAATTGTTATCTCGCAAAT 5314 Query 104914 CGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAA 104973 ||| |||| || || ||||| ||||| || ||||| ||| ||||||||| ||||| Sbjct 5315 TGAGGTTGGTGTTCCTTATATGCTGTACAAGGATGCCTGCAACTCAAAGAGTAACCAAAA 5374 Query 104974 GAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAA 105033 ||||||||| |||||||| || ||||| || |||||||| |||||| ||| | Sbjct 5375 GAATTTGGGGACAATCAAGAGCTCGAATCTGTGCACAGAAATTATGGAATATACTGCGCC 5434 Query 105034 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA 105093 ||||| || || || || || | || || || || | | || ||| | ||||| Sbjct 5435 CGATGAAACTGCCGTCTGCAATTTGGCGTCCATTGCCGTTAATATGTTTGTAAAGCCAGA 5494 Query 105094 GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCT 105153 || | || || | ||| | | ||| |||| ||| || || | ||| || Sbjct 5495 ---TAAATCTTTCGACTTCATCAAATTAAAGGAACTTACCAAACTAGTTACTAGAAATCT 5551 Query 105154 AAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATAT 105210 |||| | || || | || | ||| || || ||| ||| | || || ||||| Sbjct 5552 GAACAAGATCATCGACATCAACTATTATCCTGTACCTGA---AGCTAGAAACTCAAATAT 5608 Query 105211 GAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTT--TGT 105268 |||||| |||||||||||| | ||| | ||||| | || |||| || | |||| || Sbjct 5609 GAGACATCGTCCAATTGGTATTGGTATACAGGGATTGGCCGATGCTTTTA-TCTTGATGA 5667 Query 105269 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATG 105328 | | | || || ||| ||||| | | | |||| | ||||| ||||| | Sbjct 5668 GGATTC-CGTTCGAAAGCGAAGAAGCACAAAAGGTTAATGTACAGATATTCGAGACTCTT 5726 Query 105329 TATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 105388 ||| | | ||| | ||| | || | || | || || ||||| ||||| || Sbjct 5727 TATTATGGAGCTTTAGAGTCCAGCTGTGAAATTGCTGAAAGAGATGGACCATACTCGACA 5786 Query 105389 TTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGA 105446 | || || ||||| || || ||||| | || |||| |||||||| |||| || | | Sbjct 5787 TACGAAGGATCTCCGGC--CAGTAAGGGAATTCTACAATATGATATGT-GGAATGTAACA 5843 Query 105447 CCA--AGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 105504 ||| || || | | || |||| || | || ||| ||| || | || | | Sbjct 5844 CCAACAGATTTA-TGGGATTGGGCTGCCTTAAAAGAAAAAATCGCCAAGCACGGAATCAG 5902 Query 105505 TAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 105564 || |||||| | ||||| |||||||| || || || ||||| || || ||||| Sbjct 5903 GAATTCTCTCCTTCTAGCTCCTATGCCAACGGCTAGTACTGCCCAAATTTTAGGAAATAA 5962 Query 105565 TGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTT 105624 ||| | | | ||||| ||||| | || || || | ||| | || ||||| || Sbjct 5963 TGAGTCCATCGAACCGTACACAAGTAATATTTACACTCGCAGAGTGCAAGCTGGAGAATT 6022 Query 105625 TGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA 105684 || |||| | ||| | | | || || ||| | || || ||| | ||| Sbjct 6023 CCCAGTTATCAATCATCATTTATTAAAAGATCTGGTAGAACTAGGCCTGTGGGACGAGGT 6082 Query 105685 TATGAAG---GATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCC 105741 |||||| | || || | || ||||||||| || || || |||||| Sbjct 6083 CATGAAGAACCAACTTATCGCCAA---CTATGGTTCCATCCAGAACATCCCCAGTATTCC 6139 Query 105742 AAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGA 105801 | |||| || ||||| | || || || ||||| ||| | |||| ||| || | Sbjct 6140 AGATGATATCAAGAAACTATATAAAACTGTGTGGGAGATCTCGCAGAAGACTGTGATCAA 6199 Query 105802 CATGGCCGCAGATCGTGGTCGC-TTCATTGATCAAAGTCAAAGTATGAA 105849 |||| ||||||||||||| ||| || |||||||| ||||| || |||| Sbjct 6200 CATGTCCGCAGATCGTGG-CGCATTTATTGATCAGAGTCAGAGCCTGAA 6247 >seq4241 Length=192509 Score = 118 bits (130), Expect = 1e-21 Identities = 455/702 (65%), Gaps = 21/702 (3%) Strand=Plus/Minus Query 104906 TCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 104965 || |||| ||| |||| || |||||| | ||||| || ||||| ||| ||||| Sbjct 52710 TCGCAAATTGAGGTTGGTGTTCCTTACATGATGTACAAGGATGCCTGCAACTCGAAGAGC 52651 Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 || ||| |||||||||| ||||| || || || || || |||||||| |||||| Sbjct 52650 AACCAACAGAATTTGGGGACAATCAAAAGCTCGAACCTGTGCACAGAAATAGTGGAATAC 52591 Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085 || | || || || || || ||||| | || ||||| || | || || ||| Sbjct 52590 ACTGCGCCCGACGAAACTGCCGTCTGTAATTTAGCGTCAATTGCCGTTAACATGTTTGTA 52531 Query 105086 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACC 105145 | ||||| | | |||| |||| ||||| | ||| | || ||| || || Sbjct 52530 AAACCAGATAAAT---CATTCGATTTCATCAAACTGAAGGAACTCACCAAACTAGTTACT 52474 Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTG---CTCGTAAA 105202 | ||| || |||| | || || | || | || || || | ||| || | || Sbjct 52473 AGAAATCTGAACAAGATCATCGACATCAACTACTATCCTGT---GCCTGAAGCTAGAAAC 52417 Query 105203 TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT 105262 || ||||||||||| |||||||||||| ||||| | |||||| | || |||| || | | Sbjct 52416 TCAAATATGAGACATCGTCCAATTGGTATCGGTATACAGGGTTTGGCCGATGCTTTTA-T 52358 Query 105263 CTT--TGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTG 105320 ||| || | | | || || ||| ||||| | | | |||| | ||||| | Sbjct 52357 CTTGATGAGGATTC-CGTTCGAAAGCGAAGAAGCACAAAAGTTAAATGTACAGATATTCG 52299 Query 105321 AGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCAT 105380 |||| | || | | ||| | || |||| | || | || || ||||| || | Sbjct 52298 AGACTCTTTACTATGGAGCTTTAGAAACGAGCTGTGAAATCGCTGAAAGAGATGGACCGT 52239 Query 105381 ATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGA 105438 || ||| | | | || ||||| || || |||||| | || |||| ||||||| ||| Sbjct 52238 ATTCAACTTATAAAGGATCTCCGGC--CAGCAAGGGAATTCTCCAATACGATATGT-GGA 52182 Query 105439 AGGTGAGACCAAGCTTCACTA--CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAG 105496 | || | ||||| | ||| || |||| || | |||||| ||| || | Sbjct 52181 ATGTAACACCAA-CAGACCTATGGGATTGGGCCGCCTTAAAGGAAAAAATCGCCAAGCAC 52123 Query 105497 GGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTG 105556 || | | || |||||| | || || ||||||||||| ||| || ||||| || Sbjct 52122 GGAATCAGGAATTCTCTCCTTCTTGCACCTATGCCAACAGCTAGCACTGCCCAAATTTTA 52063 Query 105557 GGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 105598 || || || || | ||| ||||| ||||| | ||||| ||| Sbjct 52062 GGAAACAACGAGTCCTTCGAACCGTACACAAGTAACATTTAT 52021 >seq4643 Length=985661 Score = 111 bits (122), Expect = 2e-19 Identities = 237/352 (67%), Gaps = 9/352 (3%) Strand=Plus/Plus Query 104906 TCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 104965 || |||| ||| |||| || || ||||| ||||| || ||||| ||| ||||||| Sbjct 333499 TCGCAAATTGAGGTTGGTGTTCCTTATATGCTGTACAAGGATGCCTGCAACTCAAAGAGT 333558 Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 || ||| |||||||||| |||||||| || || || || |||||||| |||||| | Sbjct 333559 AACCAACAGAATTTGGGCACAATCAAGAGCTCGAACCTGTGCACAGAAATAATGGAATAT 333618 Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085 || | || || || || || ||||| | ||||| || || | | || ||| Sbjct 333619 ACTGCGCCCGACGAAACTGCCGTCTGTAATTTGGCATCCATTGCCGTTAATATGTTTGTA 333678 Query 105086 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACC 105145 | ||||| | | |||| |||| ||| | | ||| |||| ||| || || Sbjct 333679 AAACCAGATAAAT---CATTCGATTTCATCAAATTAAAGGAACTTACCAAACTAGTTACT 333735 Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAA 105202 | ||| || |||| | || || | || | ||| || || ||| ||| | || Sbjct 333736 AGAAATCTGAACAAGATCATCGACATCAACTATTATCCTGTACCTGAA---GCTAGAAAC 333792 Query 105203 TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATG 105254 || ||||||||||| |||||||||||| | ||| | ||||| | || |||| Sbjct 333793 TCAAATATGAGACATCGTCCAATTGGTATTGGTATACAGGGATTGGCCGATG 333844 >seq1791 Length=138052 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/224 (71%), Gaps = 13/224 (6%) Strand=Plus/Plus Query 7347 ATTGGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCT 7406 ||||| ||||| |||||||||||| ||||| ||||||||||| || || || | Sbjct 71485 ATTGGATCGTCGTTAATTACCGCGAGGCTTACAACATGTTTGCGTGCAATGGGATTCTGT 71544 Query 7407 TCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CGAGG-G 7464 |||| || || || |||||||| | | ||||||||||| ||||| || |||| | Sbjct 71545 TCAATCACGAGAGTCCCAGACGAGGAGAAACCTTTGTCACAAGAAAGATAACAAGAGGAG 71604 Query 7465 TATCAAACAAATCATGAAGGGTGAAAAG--GAGTTCATTGAATTGGGTAACAT--AAACG 7520 | |||| | |||| || || ||| || || | ||||||||||| | | | Sbjct 71605 TCGCAAA-GATTCATTTAG---GACAAGCCGAAGTCTTAGAATTGGGTAATCTTGATTCT 71660 Query 7521 CGGCGAGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATG 7564 || | |||| ||||||||||| || ||||| || |||| |||| Sbjct 71661 CGTC--GAGACTGGGGTCACGCCAAAGACTACGTCGAAG-TATG 71701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583226897966000