Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1383 185 7e-42 >seq1383 Length=53393 Score = 185 bits (204), Expect = 7e-42 Identities = 354/519 (68%), Gaps = 2/519 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 |||||||||| ||| ||||||||||| || || | || ||| ||||||||||| || || Sbjct 32148 AGCCCGGTGATGTGTGCCATCATGTAGGTAAGTAAAGCGTAACTGGCGATGTTGAACGGA 32089 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || ||||| ||||| ||| | || |||||||| ||| | || | |||||||| Sbjct 32088 ACTCCGAGTCCCATATCCGCGGATCTCTGGTAAAGCAGGCAGCTCAACTCTCCGTTAGCA 32029 Query 30062 ACGTAAAACTGACACATGGC-GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 30120 |||||||| || || | | || || || || | |||||| | | ||| | || Sbjct 32028 ACGTAAAATTG-GACGAGACAATGACAAGGCGGTAAAGCCATCTGCGGAATGTCGATTGG 31970 Query 30121 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGC 30180 ||||| ||||||| ||||| | ||| || | ||| | ||| |||| | | | Sbjct 31969 ATTCCAAGCGCACATTATGATCCTCCTATCGTTTGGTCTATTCTTGATCGTCTGGATCAC 31910 Query 30181 GTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGC 30240 ||| ||||| ||||| | ||| | | ||| || || ||| | ||||| || Sbjct 31909 GTTGTGCAGTTGATCAATACCCTTGTTGGTGTAATCGGCGTGCATCCCTTCGTACTTGGC 31850 Query 30241 TCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC 30300 ||| |||||||||| ||||| || || | || |||| ||| || || ||||| | Sbjct 31849 ACCGTAATGCCTCCATTGGAATCCATAAATTGGACCCAAGTCACCTTCCTCCCTCGAATT 31790 Query 30301 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30360 || || | ||||| || || |||| | ||| || ||||| || | | | | | Sbjct 31789 CAACCCGACCGAATCCAAGAAATCCCTGGTGCTGTTTGCATCCCAAATGTGAATCTTCCT 31730 Query 30361 CTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30420 || | || || | ||| ||| || |||| |||||||||||||||||||||||| Sbjct 31729 GTCCTGCAATTCCTTAGCGTTCGTGCTTCCCCTGATGAACCACAGCAGCTCCTCCACGAC 31670 Query 30421 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 | ||||||| ||||| | ||| ||||| || | ||||| Sbjct 31669 GCCCTTCCAGAAGACTCGCTTCGTCGTCAGCAATGGAAA 31631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406287373627800