Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1383 176 4e-39 >seq1383 Length=53393 Score = 176 bits (194), Expect = 4e-39 Identities = 343/507 (68%), Gaps = 0/507 (0%) Strand=Plus/Plus Query 34219 ATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTG 34278 |||||| ||||||||||||| || || | |||||||||||| || |||||||||||||| Sbjct 31630 ATTTCCATTGCTGACGACGAAGCGAGTCTTCTGGAAGGGCGTCGTGGAGGAGCTGCTGTG 31689 Query 34279 GTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGA 34338 |||| | ||||| ||||||| | ||||| | | | || | | | || ||||| Sbjct 31690 GTTCATCAGGGGAAGCACGAACGCTAAGGAATTGCAGGACAGGAAGATTCACATTTGGGA 31749 Query 34339 CGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGA 34398 || || | | | || || |||| | ||||| || ||||||| || || Sbjct 31750 TGCAAACAGCACCAGGGATTTCTTGGATTCGGTCGGGTTGAATTCGAGGGAGGAAGGTGA 31809 Query 34399 CTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGA 34458 |||||| || | || || ||||| ||||| || | || || |||| |||| | Sbjct 31810 CTTGGGTCCAATTTATGGATTCCAATGGAGGCATTACGGTGCCAAGTACGAAGGGATGCA 31869 Query 34459 AGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCG 34518 || || || | |||| || || ||||| |||||||| | || | ||| Sbjct 31870 CGCCGATTACACCAACAAGGGTATTGATCAACTGCACAACGTGATCCAGACGATCAAGAA 31929 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 | || | || || |||||| | |||||||| ||||| || | || | || | ||| Sbjct 31930 TAGACCAAACGATAGGAGGATCATAATGTGCGCTTGGAATCCAATCGACATTCCGCAGAT 31989 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTG 34638 ||| | || || || || ||| |||||| ||||| || || || ||| || ||| Sbjct 31990 GGCTTTACCGCCTTGTCATTGTCTCGTCCAATTTTACGTTGCTAACGGAGAGTTGAGCTG 32049 Query 34639 CCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTA 34698 || ||| || || |||| | || ||||| | || || ||||||||||| || ||||| Sbjct 32050 CCTGCTTTACCAGAGATCCGCGGATATGGGACTCGGAGTTCCGTTCAACATCGCCAGTTA 32109 Query 34699 CGCTCTGCTCACGTACATGATCGCTCA 34725 |||| | || || |||||||| || || Sbjct 32110 CGCTTTACTTACCTACATGATGGCACA 32136 Score = 176 bits (194), Expect = 4e-39 Identities = 343/507 (68%), Gaps = 0/507 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| || || | ||||||||| || ||||||||||| || || | ||| Sbjct 32136 TGTGCCATCATGTAGGTAAGTAAAGCGTAACTGGCGATGTTGAACGGAACTCCGAGTCCC 32077 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || || | |||| || || ||| ||||| || ||| || || || ||||| |||||| Sbjct 32076 ATATCCGCGGATCTCTGGTAAAGCAGGCAGCTCAACTCTCCGTTAGCAACGTAAAATTGG 32017 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCAC 6799 ||| || || || || | |||||| | || | || | || ||||| |||||| Sbjct 32016 ACGAGACAATGACAAGGCGGTAAAGCCATCTGCGGAATGTCGATTGGATTCCAAGCGCAC 31957 Query 6800 ATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGG 6859 || | |||||| || || | || | ||| | || | |||||||| ||||| || Sbjct 31956 ATTATGATCCTCCTATCGTTTGGTCTATTCTTGATCGTCTGGATCACGTTGTGCAGTTGA 31897 Query 6860 TCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTC 6919 || |||| | || || || | |||| |||| || || | || ||| Sbjct 31896 TCAATACCCTTGTTGGTGTAATCGGCGTGCATCCCTTCGTACTTGGCACCGTAATGCCTC 31837 Query 6920 CACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTG 6979 || ||||| || || | || |||||||| || ||||||| || ||||| | Sbjct 31836 CATTGGAATCCATAAATTGGACCCAAGTCACCTTCCTCCCTCGAATTCAACCCGACCGAA 31777 Query 6980 TCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCC 7039 |||| || || | | | || || ||||| || | | | || | | | ||| Sbjct 31776 TCCAAGAAATCCCTGGTGCTGTTTGCATCCCAAATGTGAATCTTCCTGTCCTGCAATTCC 31717 Query 7040 TTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTAC 7099 || | ||||||| ||||| | |||||||||||||||||| || |||||||||||| | Sbjct 31716 TTAGCGTTCGTGCTTCCCCTGATGAACCACAGCAGCTCCTCCACGACGCCCTTCCAGAAG 31657 Query 7100 ACACGTTTCGTCGTCAGCAGCGGAAAT 7126 || || ||||||||||||| |||||| Sbjct 31656 ACTCGCTTCGTCGTCAGCAATGGAAAT 31630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448236344748000