Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq830 98.7 7e-16 >seq830 Length=194395 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | ||||| ||| || || | || || ||| || Sbjct 123295 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATCACCTTAGAAGTTGAACCATCC 123236 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||| | || || ||||| ||||| |||||| |||| | Sbjct 123235 GA-----TACAATTGAGAACGTTAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCAG 123181 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| || || || || || ||||| ||||| || | | | |||||| |||| Sbjct 123180 ATCAGCAACGTTTGATCTTCGCAGGTAAACAGTTGGAGGATGGCAGGACCTTGTCTGATT 123121 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| || || || ||||||||||||||| | || ||||| Sbjct 123120 ACAATATCCAAAAGGAATCTACATTACATTTGGTTTTGCGTCTTCGAGGCGG 123069 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| | ||||| ||| || || | || || || | Sbjct 123523 ATGCAGATTTTTGTGAAAACCTTAACTGGTAAAACCATCACTTTGGAGGTTGAGCCTTCT 123464 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || ||||| || || ||||| ||||| | || || ||| Sbjct 123463 GACACTATTGAAAATGTCAAGGCTAAGATTCAAGACAAGGAAGGGATCCCCCCAGATCAG 123404 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATTAC 27966 ||||| || ||||||||||| ||||| ||||| || | |||| || |||| || ||| Sbjct 123403 CAACGTTTGATTTTTGCCGGTAAACAGTTGGAAGATG---GCAGGACTCTGTCTGACTAC 123347 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || |||| | ||||||||||||||| | ||||| || Sbjct 123346 AACATCCAGAAGGAATCCACTCTCCATTTGGTTTTGCGTCTTCGTGGAGG 123297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/235 (69%), Gaps = 16/235 (7%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || ||||| | ||||| ||| ||| || | || || ||| || Sbjct 123751 ATGCAGATCTTCGTTAAAACCTTGACTGGAAAAACTATCACTTTGGAAGTTGAACCATCC 123692 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||| | ||||| ||||| ||||| ||||| | || | Sbjct 123691 GA-----TACAATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCCCCAG 123637 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCG 27961 | |||||||| ||||| || ||||| ||||||||||| || | |||| || |||| | Sbjct 123636 ATCAGCAACGTTTAATCTTCGCCGGTAAACAATTGGAAGATG---GCAGGACTCTGTCTG 123580 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| || || |||| | |||||||| |||||| | ||||| || Sbjct 123579 ATTACAATATCCAGAAGGAATCCACTCTCCATTTGGTATTGCGTCTTCGTGGAGG 123525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || |||||||| || |||||||| || || |||||||| Sbjct 122974 GACAAAGAAGGTATTCCTCCAGACCAGCAACGTTTGATTTTTGCGGGTAAGCAATTGGAG 122915 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | | | ||||| ||||| ||||| || || ||| ||| | ||| | || || Sbjct 122914 GATGGTAGAACTTTGTCGGATTATAACATTCAGAAGGAGTCCACCCTCCATCTAGTGTTA 122855 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 122854 CGTCTGCGTGGTGG 122841 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/137 (74%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || |||||||| || || ||||| || ||||||||||| Sbjct 124360 GACAAGGAAGGAATTCCTCCAGATCAGCAACGTTTGATCTTTGCTGGTAAACAATTGGAA 124301 Query 27943 GACGAACGCAG--CT-TGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 || | |||| || ||||||| ||||||||||| || || ||| | ||||| || Sbjct 124300 GATG---GCAGGACTCTGTCCGACTACAACATCCAGAAGGAATCTACTCTCCATTTAGTA 124244 Query 28000 TTGCGTTTGCGTGGCGG 28016 |||||| | ||||| || Sbjct 124243 TTGCGTCTTCGTGGAGG 124227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355842232610550