Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq830 127 1e-24 seq429 84.2 1e-11 >seq830 Length=194395 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| ||||| | |||||||| || |||||| | || || || | | Sbjct 123068 AATGCAGATTTTCGTGAAAACTTTGACGGGAAAGACTATCACTTTGGAGGTGGAGCCATC 123009 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | |||| |||||| |||||||||||| | || ||||| || Sbjct 123008 GGACACAATTGAGAACGTAAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCA 122949 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||||| || ||||| || || ||| |||| || | | ||||| ||||| || Sbjct 122948 GCAACGTTTGATTTTTGCGGGTAAGCAATTGGAGGATGGTAGAACTTTGTCGGATTATAA 122889 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || |||||||| | ||| |||| ||| | |||| || || Sbjct 122888 CATTCAGAAGGAGTCCACCCTCCATCTAGTGTTACGTCTGCGTGGTGG 122841 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||||||| | || |||||||| |||||| | |||||||| | | Sbjct 123751 ATGCAGATCTTCGTTAAAACCTTGACTGGAAAAACTATCACTTTGGAAGTTGAACCATCC 123692 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || ||||| ||||| ||||| | || |||||||| Sbjct 123691 GATACAATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCCCCAGATCAG 123632 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| || ||||| |||||| ||||||| | | ||| | |||||||| Sbjct 123631 CAACGTTTAATCTTCGCCGGTAAACAATTGGAAGATGGCAGGACTCTGTCTGATTACAAT 123572 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || || ||||| | ||||| || || Sbjct 123571 ATCCAGAAGGAATCCACTCTCCATTTGGTATT 123540 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||||||| | || |||||||| || || | |||||||| | | Sbjct 124453 ATGCAGATCTTCGTTAAAACCTTGACTGGAAAAACTATTACCTTGGAAGTTGAACCATCT 124394 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| ||||| ||||| ||||| | || |||||||| Sbjct 124393 GACACAATTGAAAACGTAAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGATCAG 124334 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| || |||||| ||||||| | | ||| | ||| |||||| Sbjct 124333 CAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCCGACTACAAC 124274 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || || || || | |||||||| || Sbjct 124273 ATCCAGAAGGAATCTACTCTCCATTTAGTATT 124242 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || |||||| | || |||||||| ||||| | |||||||| | | Sbjct 123295 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATCACCTTAGAAGTTGAACCATCC 123236 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| || |||| | |||| || ||||| |||||| | || |||||||| Sbjct 123235 GATACAATTGAGAACGTTAAGGCCAAAA-TTCAAGACAAGGAAGGTATTCCTCCAGATCA 123177 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||||| || || || || ||||| |||| || | | || || |||||||| Sbjct 123176 GCAACGTTTGATCTTCGCAGGTAAACAGTTGGAGGATGGCAGGACCTTGTCTGATTACAA 123117 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || ||||||||||| ||||| | | ||||| ||| Sbjct 123116 TATCCAAAAGGAATCTACATTACATTTGGTTTTGCGTCTTCGAGGCGGA 123068 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||| | || || ||||| |||||| | || ||||| | | Sbjct 123523 ATGCAGATTTTTGTGAAAACCTTAACTGGTAAAACCATCACTTTGGAGGTTGAGCCTTCT 123464 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | || || ||| ||||| ||||| | || |||||||| Sbjct 123463 GACACTATTGAAAATGTCAAGGCTAAGATTCAAGACAAGGAAGGGATCCCCCCAGATCAG 123404 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || |||||||| ||||| ||||||| | | ||| | || |||||| Sbjct 123403 CAACGTTTGATTTTTGCCGGTAAACAGTTGGAAGATGGCAGGACTCTGTCTGACTACAAC 123344 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || || ||||| | ||||| ||||| Sbjct 123343 ATCCAGAAGGAATCCACTCTCCATTTGGTTTT 123312 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||||||| | || |||||||| || || | |||||||| | | Sbjct 124681 ATGCAGATCTTTGTTAAAACCTTGACTGGAAAAACCATTACCTTGGAAGTTGAACCATCT 124622 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| ||||| ||||| ||||| | || ||||||||| Sbjct 124621 GACACAATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAA 124562 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || || || || ||| ||||||| | | ||| | || |||||| Sbjct 124561 CAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCAGGACTCTGTCGGACTACAAC 124502 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| || ||||| | ||||| || || Sbjct 124501 ATTCAAAAGGAATCCACCCTTCATTTGGTATT 124470 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||||||||| | || |||||||| || ||| | |||||||| | | Sbjct 124225 ATGCAGATCTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCATCT 124166 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||||| ||||| ||||| | || |||||||| Sbjct 124165 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCTCCAGATCAG 124106 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || || || |||||| ||||||| | | ||| | || |||||| Sbjct 124105 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCAGACTACAAC 124046 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| || || || | ||||| || || Sbjct 124045 ATCCAAAAGGAATCTACCCTTCATTTGGTATT 124014 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||||||||| | || |||||||| |||||| | |||||||| | | Sbjct 123997 ATGCAGATCTTCGTTAAAACATTGACTGGAAAAACCATCACTTTAGAAGTTGAACCATCC 123938 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| || |||| | ||||| ||||| ||||| | || |||||||| Sbjct 123937 GATACAATTGAGAACGTTAAGGC-CAAAATCCAAGACAAGGAAGGAATCCCCCCAGATCA 123879 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 || |||||||| || ||||| |||||| ||||||| Sbjct 123878 GCAACGTTTAATCTTCGCCGGAAAACAATTGGAAGA 123843 >seq429 Length=41586 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| ||||| | ||||| || || ||||| || || || || | Sbjct 1339 AAAATGCAGATTTTCGTAAAAACTTTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCT 1280 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | || | || || ||||| || || | || ||||| Sbjct 1279 TCCGATACCATCGAGAATGTGAAGGC-CAAGATCCAAGACAAGGAGGGAATTCCCCCAGA 1221 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || ||| | || || ||||| || ||||| || || | ||| ||| | || || Sbjct 1220 TCAGCAACGTCTTATCTTCGCCGGTAAGCAACTCGAGGATGGACGTACTCTGTCGGACTA 1161 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||| || || || ||||| || || || || Sbjct 1160 CAACATCCAGAAGGAATCCACTTTGCACTTGGT 1128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337990444362200