Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1383 149 5e-31 >seq1383 Length=53393 Score = 149 bits (164), Expect = 5e-31 Identities = 341/519 (66%), Gaps = 2/519 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 |||||||||| ||| ||||||||||| || || | || ||| ||||||||||| || || Sbjct 32148 AGCCCGGTGATGTGTGCCATCATGTAGGTAAGTAAAGCGTAACTGGCGATGTTGAACGGA 32089 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || ||||| ||||| ||| | || |||||||| ||| |||| | |||||||| Sbjct 32088 ACTCCGAGTCCCATATCCGCGGATCTCTGGTAAAGCAGGCAGCTCAACTCTCCGTTAGCA 32029 Query 29834 ACGTAAAACTGACACATGGC-ATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGG 29892 |||||||| || || | | ||| || || || | ||||| | | ||| | || Sbjct 32028 ACGTAAAATTG-GACGAGACAATGACAAGGCGGTAAAGCCATCTGCGGAATGTCGATTGG 31970 Query 29893 GTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGC 29952 ||||| || |||| ||||| | ||| || | ||| | ||| |||| | | | Sbjct 31969 ATTCCAAGCGCACATTATGATCCTCCTATCGTTTGGTCTATTCTTGATCGTCTGGATCAC 31910 Query 29953 GTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNN 30012 ||| ||||| ||||| | ||| | | ||| || | Sbjct 31909 GTTGTGCAGTTGATCAATACCCTTGTTGGTGTAATCGGCGTGCATCCCTTCGTACTTGGC 31850 Query 30013 NNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC 30072 || |||||||||| ||||| || || | || |||| ||| || || ||||| | Sbjct 31849 ACCGTAATGCCTCCATTGGAATCCATAAATTGGACCCAAGTCACCTTCCTCCCTCGAATT 31790 Query 30073 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30132 || || | ||||| || || |||| | ||| || ||||| || | | | | | Sbjct 31789 CAACCCGACCGAATCCAAGAAATCCCTGGTGCTGTTTGCATCCCAAATGTGAATCTTCCT 31730 Query 30133 CTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30192 || | || || | ||| ||| || |||| |||||||||||||||||||||||| Sbjct 31729 GTCCTGCAATTCCTTAGCGTTCGTGCTTCCCCTGATGAACCACAGCAGCTCCTCCACGAC 31670 Query 30193 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 | ||||||| ||||| | ||| ||||| || | ||||| Sbjct 31669 GCCCTTCCAGAAGACTCGCTTCGTCGTCAGCAATGGAAA 31631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406140181969900