Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq4450 239 4e-58 >seq4450 Length=177458 Score = 239 bits (264), Expect = 4e-58 Identities = 572/858 (67%), Gaps = 24/858 (3%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 |||||||| ||| ||||||||||||||| ||||| || |||| ||| || || ||| Sbjct 24025 TGGTATTCTCCAACTTTCTTTTCGAAGAAATTGGTTTTTCCGTCTATCGATATGTTATCC 24084 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTT--AGAGCTACAAGCA 4377 ||||||| || ||||| | || ||| | ||| | || | | || | |||| Sbjct 24085 ATAAAATTGAAGGGATTTCGCGAGTGGTA--GATTTCAGCGATTCCCAAATCTGCCAGCA 24142 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATC 4437 |||||| || ||||| || || | | ||| ||| |||| || || || || || Sbjct 24143 GCTTGTCAGCCACGAATTCGATGTATTCACACATAAGTCCGCAATTCATGCCGATCAAAG 24202 Query 4438 TCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATAT 4497 ||||| || || | || | |||||| ||||| || | ||||| ||| |||| || | Sbjct 24203 ATACAGGCAGGGCTTCGGTAAGAAACTCCTGTTCGATCTTCACGGCATCTCTGATGATGT 24262 Query 4498 CTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAAT 4557 || | | || | || || || | || | || ||||| |||||||| || | Sbjct 24263 TCTTGACCCTCTCCTCTGAAGGCTTCTGCACGACGTGCTTAAACATCAAACACGCGAATT 24322 Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 || |||| |||| || ||| |||| ||||| || || || | |||||||| | Sbjct 24323 TGCAGTGCATCGCTTCATCCCTGGAGATCAACTCGTTGGAGAAAGTGAGACCGGGCATCA 24382 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 | ||| |||| || ||||| || || | ||| || || || ||||| || || || | Sbjct 24383 ATCCTTTCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCGGAGAAGAAAATACCCTCCA 24442 Query 4678 CGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTT--TGTCTTTAA-TCCATT 4734 | || ||||| || || | | ||||| | | |||| || || || |||| | Sbjct 24443 CTGCTGCAAAAGCGACGACCCTTTCACCGAATG---TCGCTTCTTGACTGGAAATCCAAT 24499 Query 4735 TTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATT 4794 |||| ||||| | ||| || || || ||||| ||||| || | || || |||| | Sbjct 24500 TTAACGCCCAATCAGCCTTCTTTTTCACGCATGGAATAGTTTCAATTGCATTAAGAAGAA 24559 Query 4795 TACTTTT----TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCA 4850 |||||| |||| || ||| |||||||||||||| | | || ||||| Sbjct 24560 AACTTTTCTCCTTCACAT----CTTTGATATAAGTGTCTATCAACAAACTGTACATCAGT 24615 Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGA 4910 || ||||| || || || |||||||| | || || ||| || | || || | ||||| Sbjct 24616 GAGTGTATGTTCTCCATGGCAATCTGCATGCCATAGAAGAATTTTGCCTCAATAACTTGT 24675 Query 4911 ACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAA 4970 ||||| |||| ||||| ||||| | |||||| || || ||||| ||| ||| |||||| Sbjct 24676 ACTTCTTTACTGAATCTCTCTACCAGGTTTTCATTGACAATACCATCAGAGGCAGCAAAA 24735 Query 4971 AACGCCAAAACATGAGATATAAAGTACTGTTCGTCA---GGCTTAAGTTTTTTCCAGTGG 5027 || ||||| |||| | | | | | |||| ||| | | | ||||| ||| | Sbjct 24736 AATGCCAACACAT---ACTTGATGAAATGTTTCTCATTTGAAGTCATTTTTTCCCAATCT 24792 Query 5028 GGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTG 5087 | || || | ||||||||||| | ||| ||||||| || || || |||| || Sbjct 24793 TTGTAGTCCTTCGACAAATCAACTTCATGAACCTTCCAAAATGAGGCCTCAGCTTGTTCA 24852 Query 5088 TACATAGACCAAATATCA 5105 ||||| ||| || ||| Sbjct 24853 TACATCTTCCACATGTCA 24870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427025398298450