Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1383 178 1e-39 >seq1383 Length=53393 Score = 178 bits (196), Expect = 1e-39 Identities = 350/518 (68%), Gaps = 0/518 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 |||||||||| ||| ||||||||||| || || | || ||| ||||||||||| || || Sbjct 32148 AGCCCGGTGATGTGTGCCATCATGTAGGTAAGTAAAGCGTAACTGGCGATGTTGAACGGA 32089 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || ||||| ||||| ||| | || |||||||| ||| | || | |||||| | Sbjct 32088 ACTCCGAGTCCCATATCCGCGGATCTCTGGTAAAGCAGGCAGCTCAACTCTCCGTTAGCA 32029 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 27387 |||||||| || | || || || || | |||||| | | ||| | || Sbjct 32028 ACGTAAAATTGGACGAGACAATGACAAGGCGGTAAAGCCATCTGCGGAATGTCGATTGGA 31969 Query 27388 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 27447 ||||| ||||||| ||||| | ||| || | ||| | ||| |||| | | || Sbjct 31968 TTCCAAGCGCACATTATGATCCTCCTATCGTTTGGTCTATTCTTGATCGTCTGGATCACG 31909 Query 27448 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCT 27507 || ||||| ||||| | ||| | | ||| || | ||| | ||||| || Sbjct 31908 TTGTGCAGTTGATCAATACCCTTGTTGGTGTAATCGGCGTGCATCCCTTCGTACTTGGCA 31849 Query 27508 CCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG 27567 ||| |||||||||||||||| || || | || |||| ||| || || ||||| | Sbjct 31848 CCGTAATGCCTCCATTGGAATCCATAAATTGGACCCAAGTCACCTTCCTCCCTCGAATTC 31789 Query 27568 AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC 27627 || || | ||||| || || |||| | ||| || ||||| || | | | | | Sbjct 31788 AACCCGACCGAATCCAAGAAATCCCTGGTGCTGTTTGCATCCCAAATGTGAATCTTCCTG 31729 Query 27628 TCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACG 27687 || | || || | ||| ||| || |||| ||||||||||||||||||||||||| Sbjct 31728 TCCTGCAATTCCTTAGCGTTCGTGCTTCCCCTGATGAACCACAGCAGCTCCTCCACGACG 31669 Query 27688 GCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 ||||||| ||||| | ||| ||||| || | ||||| Sbjct 31668 CCCTTCCAGAAGACTCGCTTCGTCGTCAGCAATGGAAA 31631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369486259334150