Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq429 113 1e-19 seq830 111 4e-19 >seq429 Length=41586 Score = 113 bits (124), Expect = 1e-19 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| | || | ||| || || || ||||||||||| || | | ||| Sbjct 1115 CCTGAGGCGGAGGACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGT 1174 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||| || || || |||||||||||||| | ||||| || | | ||||| Sbjct 1175 ACGTCCATCCTCGAGTTGCTTACCGGCGAAGATAAGACGTTGCTGATCTGGGGGAATTCC 1234 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| ||||| || || || ||| |||| | | | || ||| ||| || ||||| Sbjct 1235 CTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACCTCAAG 1294 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| | ||| || ||||| | ||||||||| Sbjct 1295 GGTGATGGTCTTACCCGTCAAAGTTTTTACGAAAATCTGCATTTT 1339 >seq830 Length=194395 Score = 111 bits (122), Expect = 4e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| ||||| || |||||||||||||| || | | ||| || |||||||| | Sbjct 124022 ATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGACAGAGTCCTGCCATCTTCCAATTG 124081 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || |||||||| | | ||||| || | | |||||||||||| ||||| ||||| Sbjct 124082 TTTACCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGGATTTT 124141 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||| | || | |||| || || ||||| | |||||| ||||| || || Sbjct 124142 GGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCCAAAGTAATGGTTTTTCCAGT 124201 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||| |||||| Sbjct 124202 CAATGTTTTAACGAAGATCTGCAT 124225 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| ||||| || || || ||||| |||||||| | | ||| || |||||||| | Sbjct 123548 ATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGACAGAGTCCTGCCATCTTCCAATTG 123607 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||||||||| | | ||||| || | | |||||||||||| ||||| ||||| Sbjct 123608 TTTACCGGCGAAGATTAAACGTTGCTGATCTGGGGGGATTCCTTCCTTGTCTTGGATTTT 123667 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||| | || | | || || || ||||| | ||| |||||||| || || Sbjct 123668 AGCCTTGACGTTTTCAATTGTATCGGATGGTTCAACTTCCAAAGTGATAGTTTTTCCAGT 123727 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||| |||||| Sbjct 123728 CAAGGTTTTAACGAAGATCTGCAT 123751 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| |||||||| || || ||||||||||| |||| | ||| || |||||||| | Sbjct 124250 ATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCTTCCAATTG 124309 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| | | ||||| || | | ||||||||||| ||||| ||||| Sbjct 124310 TTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTT 124369 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || || | || | |||| || || ||||| | ||||||||||| || || Sbjct 124370 GGCCTTTACGTTTTCAATTGTGTCAGATGGTTCAACTTCCAAGGTAATAGTTTTTCCAGT 124429 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||| |||||| Sbjct 124430 CAAGGTTTTAACGAAGATCTGCAT 124453 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| ||||| || |||||||||||||| || | | ||| || |||||||| | Sbjct 124706 ATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCCGACAGAGTCCTGCCATCTTCCAATTG 124765 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || |||||||| | | ||||| || | | |||||| || || |||||||| || Sbjct 124766 TTTACCAGCGAAGATCAAACGTTGCTGATCAGGTGGGATTCCCTCTTTGTCTTGAATCTT 124825 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || ||| | || | | | || || ||| || || | ||| || ||||| || || Sbjct 124826 AGCCTTCACATTTTCAATGGTATCAGAGGGCTCAACCTCCAAAGTGATGGTTTTACCAGT 124885 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| |||| |||||| Sbjct 124886 TAAGGTTTTCACAAAGATCTGCAT 124909 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||| || || ||||| || || ||||| ||||| | |||||||| ||||| || Sbjct 122859 ACTAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCCGACAAAGTTCTACCATCCTCC 122918 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || || || || | | |||||||| | | || ||||| || |||||| Sbjct 122919 AATTGCTTACCCGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGA 122978 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| || || |||| | |||| || ||| || || | ||| ||||| || Sbjct 122979 ATTTTAGCCTTTACGTTCTCAATTGTGTCCGATGGCTCCACCTCCAAAGTGATAGTCTTT 123038 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| | ||| |||||||| | ||||||| Sbjct 123039 CCCGTCAAAGTTTTCACGAAAATCTGCATT 123068 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| ||||| || || || ||||||||||| || | | ||| || |||||||| | Sbjct 123320 ATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTCCTGCCATCTTCCAACTG 123379 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||| || || | | ||||| || | | ||| |||||||| |||||||| || Sbjct 123380 TTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGGATCCCTTCCTTGTCTTGAATCTT 123439 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||| | || | |||| ||| ||| || || | ||| || ||||| || || Sbjct 123440 AGCCTTGACATTTTCAATAGTGTCAGAAGGCTCAACCTCCAAAGTGATGGTTTTACCAGT 123499 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || | |||||| Sbjct 123500 TAAGGTTTTCACAAAAATCTGCAT 123523 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| || || || ||||| |||||||| || | | ||| || |||||||| | Sbjct 124478 ATGAAGGGTGGATTCCTTTTGAATGTTGTAGTCCGACAGAGTCCTGCCATCTTCCAATTG 124537 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || || |||||||| | | || || || | | |||||||||||| ||||| ||||| Sbjct 124538 CTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATTTT 124597 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||||| | || | |||| || || ||||| | ||||| ||||| || || Sbjct 124598 GGCTTTGACATTTTCAATTGTGTCAGATGGTTCAACTTCCAAGGTAATGGTTTTTCCAGT 124657 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | || || || |||| |||||| Sbjct 124658 CAAGGTTTTAACAAAGATCTGCAT 124681 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || ||||||||||| || | | |||||| |||||||| | Sbjct 122633 CAAG-TGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTGCCATCTTCCA 122691 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || || | | |||||| || | | ||||||||||| || || | Sbjct 122692 ATTGCTTGCCAGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGA 122751 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| || |||| | | || || || || || | ||| ||||| || | Sbjct 122752 TTTTGGCTTTAACGTTCTCGATTGTATCAGACGGTTCCACCTCCAAAGTGATAGTCTTTC 122811 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | ||| || ||||||| |||||| Sbjct 122812 CCGTCAAAGTTTTTACGAAGATCTGCAT 122839 Score = 84.2 bits (92), Expect = 5e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 151921 GGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCC 151980 |||| |||||||| | | ||| || |||||||| | ||| ||||||||||| | | Sbjct 123814 GGATATTGTAATCAGACAGAGTCCTGCCATCTTCCAATTGTTTTCCGGCGAAGATTAAAC 123873 Query 151981 TCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGC 152040 ||||| || | | |||||||||||| ||||| ||||| || || |||| | Sbjct 123874 GTTGCTGATCTGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACGTTCTCAATTG 123933 Query 152041 TGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCT 152100 | || || || ||||| | ||| || ||||| || || | || || ||||||| || Sbjct 123934 TATCGGATGGTTCAACTTCTAAAGTGATGGTTTTTCCAGTCAATGTTTTAACGAAGATCT 123993 Query 152101 GCAT 152104 |||| Sbjct 123994 GCAT 123997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153752057520150