Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1314 141 7e-29 seq830 118 8e-22 seq1636 86.0 5e-12 >seq1314 Length=49468 Score = 141 bits (156), Expect = 7e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 |||||||| ||| || || |||||| ||||||||||| |||| ||| ||| | || Sbjct 22022 CAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCATC 22081 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| ||||| ||||||||||| |||||||||| || | || || || || Sbjct 22082 CTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGGATTCCCTCTTTGTC 22141 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 | ||||| ||||| || | || || |||| || || ||||| | || || || Sbjct 22142 CTGGATCTTGGCCTTCACATTTTCGATAGTATCGGAGGGCTCGACCTCGAGGGTGATGGT 22201 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| ||||| |||||||| |||||||| Sbjct 22202 CTTACCCGTTAGGGTTTTCACGAAAATTTGCAT 22234 >seq830 Length=194395 Score = 118 bits (130), Expect = 8e-22 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGT 44183 || |||| |||||| || ||||| ||||||||||| || | ||||| || | | Sbjct 122628 AAAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGACAGAGTTCT-GC-CAT 122685 Query 44184 CGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTT 44243 | |||| ||||| || ||||| ||||||||||||||||||| || | |||||||| | Sbjct 122686 CTTCCAATTGCTTGCCAGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCTTCCTTAT 122745 Query 44244 CCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 || || || |||| || |||| | || || || | | ||||||||||| || || Sbjct 122746 CCTGGAT-TTTGGCTTTAACGTTCTCGATTGTATCAGACGGTTCCACCTCCAAAGTGATA 122804 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| | || || |||||||| ||||| Sbjct 122805 GTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 122839 Score = 100 bits (110), Expect = 2e-16 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||| || | ||| |||| || | || ||||||||||| |||||||| Sbjct 123065 CATTCCGCCTCGAAGACGCAAAACCAAATGTAATGTAGATTCCTTTTGGATATTGTAATC 123124 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || | || |||| ||| || || || ||||||||||| |||||||||| Sbjct 123125 AGACAAGGTCCTGC-CATCCTCCAACTGTTTACCTGCGAAGATCAAACGTTGCTGATCTG 123183 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 ||| | ||||||||| | | | | || || | || |||| | || || |||| | | Sbjct 123184 GAGGAATACCTTCCTTGT-CTTGAATTTTGGCCTTAACGTTCTCAATTGTATCGGATGGT 123242 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || || || ||||| || | ||| || || || |||||||| Sbjct 123243 TCAACTTCTAAGGTGATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 123295 Score = 98.7 bits (108), Expect = 7e-16 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | ||||| || || || ||| |||||| || ||||| ||||| Sbjct 122837 CATACCACCACGCAGACGTAACACTAGATGGAGGGTGGACTCCTTCTGAATGTTATAATC 122896 Query 44167 GGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | | ||| | | || |||| ||||| || ||||| |||||||| ||||| ||| Sbjct 122897 CGACAAAGTT--CTACCATCCTCCAATTGCTTACCCGCAAAAATCAAACGTTGCTGGTCT 122954 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | ||| | |||||| || || || || ||| | |||| | || ||||| | | Sbjct 122955 GGAGGAATACCTTCTTTGTCTTGAATTTTAGCCTTTAC-GTTCTCAATTGTGTCCGATGG 123013 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||| || || ||||||||||| | || |||||||| || ||||| Sbjct 123014 CTCCACCTCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTCACGAAAATCTGCAT 123067 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| |||| || | | || |||| || || || |||||| Sbjct 124263 TCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCTTCCAATTGTTTACCAGCAAAG 124322 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| |||||||||| ||| | |||||||| || || || ||| | || Sbjct 124323 ATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTTACGTTT 124382 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||| | | ||| || |||| ||||| || ||||| || | ||| || ||| Sbjct 124383 TCAATTGTGTCAGATGGTTCAACTTCCAAGGTAATAGTTTTTCCAGTCAAGGTTTTAACG 124442 Query 44327 AAGATTTGCAT 44337 ||||| ||||| Sbjct 124443 AAGATCTGCAT 124453 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | ||| |||| ||||| || ||||||||||||||||| || Sbjct 123995 CATACCACCACGAAGACGCAATACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTC 124054 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || | | || |||| || || || || ||||||||||| |||||||||| Sbjct 124055 TGACAGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGG 124114 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| || || || ||| | || | || ||||| | | ||| Sbjct 124115 AGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGATGGTTC 124174 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| ||||| || ||||| || | || || |||||||| ||||| Sbjct 124175 AACTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 124225 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| || || ||| ||||| ||||||||||| Sbjct 123290 TTGCATACCTCCACGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTA 123349 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || | | || |||| ||| || |||||||| |||||||| |||||||| Sbjct 123350 GTCAGACAGAGTCCTGCCATCTTCCAACTGTTTACCGGCAAAAATCAAACGTTGCTGATC 123409 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | |||||||| || ||||| ||| | || | || ||||| | | Sbjct 123410 TGGGGGGATCCCTTCCTTGTCTTGAATCTTAGCCTTGACATTTTCAATAGTGTCAGAAGG 123469 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||| || || || || || || | ||| ||||| || || ||||| Sbjct 123470 CTCAACCTCCAAAGTGATGGTTTTACCAGTTAAGGTTTTCACAAAAATCTGCAT 123523 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | ||| |||| ||||| ||| |||||||| |||||||| || Sbjct 124451 CATACCACCGCGAAGACGCAATACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAGTC 124510 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || | | || |||| ||||| || || ||||||||||| || ||||||| Sbjct 124511 CGACAGAGTCCTGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGG 124570 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| || || || || | || | || ||||| | | ||| Sbjct 124571 TGGGATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTTTCAATTGTGTCAGATGGTTC 124630 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| ||||| || ||||| || | ||| || || ||||| ||||| Sbjct 124631 AACTTCCAAGGTAATGGTTTTTCCAGTCAAGGTTTTAACAAAGATCTGCAT 124681 >seq1636 Length=121147 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 46984 GTTTCCTAGATCGCCCAGGTGACGTTCGGCGGAGTTCGGGCCGCCGTGATCGCGATGGTG 47043 ||| || || || || | ||||||| || ||||| | || ||||||||||| || Sbjct 2985 GTTGCCCAGGTCACCGACGTGACGTACGTCGGAGGTGGGACCGCCGTGATCCTTGCCCTG 3044 Query 47044 AGGATTGAAGTGTTCGCCCGCCGAGGTGCAGCCGTTGGTCGTATCACCGAATTCGTGAAT 47103 ||||||||||| || |||||| |||| |||||||| | |||||||| ||||| || Sbjct 3045 CGGATTGAAGTGGGGCCCGGCCGAGATGCAACCGTTGGTGTTGTCACCGAACTCGTGGAT 3104 Query 47104 GTGAATACCGTG 47115 ||| | ||||| Sbjct 3105 GTGGAATCCGTG 3116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359969998669050