Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1314 159 8e-34 seq429 147 5e-30 seq830 140 8e-28 >seq1314 Length=49468 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || || || || || |||||||||||||| || ||| || Sbjct 22231 CAAATTTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTCGAGGTCGAGCCCTCCGAT 22172 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| ||||||||||| |||||||| || || |||||| Sbjct 22171 ACTATCGAAAATGTGAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCAGATCAGCAA 22112 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || |||||||| |||||| | || || |||| || ||| || Sbjct 22111 CGTTTGATCTTCGCCGGTAAGCAGCTCGAGGATGGACGCACCCTCTCCGACTACAACATC 22052 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || | || ||| | ||| Sbjct 22051 CAGAAGGAGTCGACCCTCCACTTGGTGTTGCGTCTC 22016 >seq429 Length=41586 Score = 147 bits (162), Expect = 5e-30 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| |||||| | || || || || |||||||| ||||| || Sbjct 1339 AAAATGC---AGATTTTCGTAAAAACTTTGACGGGTAAGACCATCACCCTTGAGGTCGAG 1283 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || ||||||||||| || || ||||| || ||||| || ||||| || || Sbjct 1282 CCTTCCGATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCA 1223 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || |||||||| |||||||||||||| || || ||||| |||||| | ||||| | || Sbjct 1222 GATCAGCAACGTCTTATCTTCGCCGGTAAGCAACTCGAGGATGGACGTACTCTGTCGGAC 1163 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || ||||| || |||| |||| Sbjct 1162 TACAACATCCAGAAGGAATCCACTTTGCA-CTTG 1130 >seq830 Length=194395 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| | || |||||||| || || | || || ||| || ||| Sbjct 124222 CAGATCTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCATCTGAC 124163 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || || || ||||| |||||||||||||| || |||||| Sbjct 124162 ACAATTGAAAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCTCCAGATCAGCAA 124103 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| |||||||| | || || ||| || Sbjct 124102 CGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCAGACTACAACATC 124043 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||| || || ||| | || ||| Sbjct 124042 CAAAAGGAATCTACCCTTCATTTGGTATTG 124013 Score = 136 bits (150), Expect = 1e-26 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| | || |||||||| ||||| | || || ||| || || Sbjct 123748 CAGATCTTCGTTAAAACCTTGACTGGAAAAACTATCACTTTGGAAGTTGAACCATCCGAT 123689 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || || || ||||| ||||||||||| || || |||||| Sbjct 123688 ACAATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCCCCAGATCAGCAA 123629 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| ||||| | |||||||| |||||||| | ||||| || || Sbjct 123628 CGTTTAATCTTCGCCGGTAAACAATTGGAAGATGGCAGGACTCTGTCTGATTACAATATC 123569 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || ||||| || || ||| | || ||| Sbjct 123568 CAGAAGGAATCCACTCTCCATTTGGTATTG 123539 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||| | || ||||| || ||||| | |||||||| || ||| Sbjct 123064 CAGATTTTCGTGAAAACTTTGACGGGAAAGACTATCACTTTGGAGGTGGAGCCATCGGAC 123005 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || || ||||| ||||||||||| || ||||| ||||||||| Sbjct 123004 ACAATTGAGAACGTAAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAGCAA 122945 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || || | || ||||| || ||| | | ||||||||| | Sbjct 122944 CGTTTGATTTTTGCGGGTAAGCAATTGGAGGATGGTAGAACTTTGTCGGATTATAACATT 122885 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 || || || || || || ||||| || || Sbjct 122884 CAGAAGGAGTCCACCCTCCATCTAGTGTT 122856 Score = 125 bits (138), Expect = 2e-23 Identities = 154/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||| | || ||||| || ||||| | ||||||||| || || Sbjct 122836 CAGATCTTCGTAAAAACTTTGACGGGAAAGACTATCACTTTGGAGGTGGAACCGTCTGAT 122777 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| ||| || || ||||| || |||||||| || || || ||||| Sbjct 122776 ACAATCGAGAACGTTAAAGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCAGCAG 122717 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || || | |||||||| || ||||| | || || ||| || Sbjct 122716 CGTTTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTGTCTGACTACAACATC 122657 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 || || |||||||| || || |||| ||| Sbjct 122656 CAGAAGGAATCAACCCTTCA-CTTGGTTT 122629 Score = 123 bits (136), Expect = 6e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| | || |||||||| ||||| | || || ||| || || Sbjct 123994 CAGATCTTCGTTAAAACATTGACTGGAAAAACCATCACTTTAGAAGTTGAACCATCCGAT 123935 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || || || || ||||| ||||||||||| || || |||||| Sbjct 123934 ACAATTGAGAACGTTAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCAGATCAGCAA 123875 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 || | ||||||||||||||||| | |||||||| |||||||| | ||||| || Sbjct 123874 CGTTTAATCTTCGCCGGAAAACAATTGGAAGATGGCAGGACTCTGTCTGATTACAA 123819 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| | || |||||||| || ||| | || || ||| || ||| Sbjct 124678 CAGATCTTTGTTAAAACCTTGACTGGAAAAACCATTACCTTGGAAGTTGAACCATCTGAC 124619 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| || || || ||||| ||||||||||| || || || ||| Sbjct 124618 ACAATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAACAA 124559 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || | |||||||| |||||||| | || || ||| | Sbjct 124558 CGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCAGGACTCTGTCGGACTACAACATT 124499 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||| || || ||| | || ||| Sbjct 124498 CAAAAGGAATCCACCCTTCATTTGGTATTG 124469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203659483952100