Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq738 197 1e-45
>seq738
Length=407637
Score = 197 bits (218), Expect = 1e-45
Identities = 578/879 (66%), Gaps = 21/879 (2%)
Strand=Plus/Plus
Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTT-TCCCTCTAAAGATATATTT 15970
|||| || ||||| || | ||||| ||||| || || || | || || || |||||
Sbjct 114301 TTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATC-AATGAAATATTA 114359
Query 15971 TCCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAA 16028
||||| ||||| || |||||| | | || |||| ||| || || || ||||| | |
Sbjct 114360 TCCATGAAATCCAAAGGATTATGAACATTGTAAAT--CTTTGAATATCCAAGTTCAATTA 114417
Query 16029 CTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA 16088
||||||||| || |||||| |||||| | | ||| | |||||| | |||| ||
Sbjct 114418 ATAATCTATCAGCAACAAATCTTATATAATTAATCATAGATGAGCAATTCAAACCTAAAA 114477
Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148
| || || | | | ||| | ||||| | ||| || |||| ||||| | || |
Sbjct 114478 TTTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGTATTA 114537
Query 16149 TATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTT---AAACATTAGACACG 16205
| | || ||||| | |||| |||| | ||| | | | ||||| |
Sbjct 114538 TTGAATAAACCTTTGAATCAGATAATTTATGTTTTAAATATTTCCTATATAAGAGACATG 114597
Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTG 16265
| || || ||||||| | || ||||| || |||||||| || |||||||| ||||
Sbjct 114598 CAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAAGTTAAACCTG 114657
Query 16266 GCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATAC 16325
|||| | || || || ||||| ||||| || ||||| ||| || ||||| || |
Sbjct 114658 GCATAATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCAGAGAAGAAAATCC 114717
Query 16326 CCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCC 16385
| ||||| |||||| || | ||||| || ||| | | | || || || | ||
Sbjct 114718 CTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTGAATTTTGATCATATATAT 114777
Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445
|||| | | ||||| | |||| | |||| || || || ||||| || ||||| |
Sbjct 114778 ATTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGATGGTCTCTATTGCGTTAAAAA 114837
Query 16446 -ATTTCTCTTTTTCCTGAA-TATCGATTATAT--ACGTATCAATCAGTAAACTGTACATT 16501
|| |||| |||| | | |||| ||| | || || | | ||| || |||||
Sbjct 114838 GATGATTCTT----CTGATCTGTAGATTCTATGAAAGTTTCTAATAATAAGCTATACATC 114893
Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561
||||| ||||| || || || | || ||||| | ||||| ||| ||| || |||
Sbjct 114894 TCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTCAATGATT 114953
Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621
|||||||| |||| ||| || || ||| || || || || ||||
Sbjct 114954 TGTACTTCTTGAATGAATCTTTCAATCAAATTATCACCAACAATTGTATCTGATGAAGCA 115013
Query 16622 AAAAACGC--CAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAAT 16679
||||| || |||||||| | || |||| |||||| || ||||| || | | |||||
Sbjct 115014 AAAAATGCAAGAATATGTGAT--ATAAAATGTTTTTCATCTGATGTCAGCTTCTTCCAAT 115071
Query 16680 CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTT 16739
| | ||| || |||| ||| || ||||||| |||||||| || || | | ||
Sbjct 115072 GAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGATGCTACAGATTGTT 115131
Query 16740 TATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778
||||| | | ||| ||||| |||| ||| |||||||
Sbjct 115132 TATACTTGTACCATATATCGGGGTATAATATTGGAAATA 115170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511116769604560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |