Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq738 197 1e-45 >seq738 Length=407637 Score = 197 bits (218), Expect = 1e-45 Identities = 578/879 (66%), Gaps = 21/879 (2%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTT-TCCCTCTAAAGATATATTT 15970 |||| || ||||| || | ||||| ||||| || || || | || || || ||||| Sbjct 114301 TTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATC-AATGAAATATTA 114359 Query 15971 TCCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAA 16028 ||||| ||||| || |||||| | | || |||| ||| || || || ||||| | | Sbjct 114360 TCCATGAAATCCAAAGGATTATGAACATTGTAAAT--CTTTGAATATCCAAGTTCAATTA 114417 Query 16029 CTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAA 16088 ||||||||| || |||||| |||||| | | ||| | |||||| | |||| || Sbjct 114418 ATAATCTATCAGCAACAAATCTTATATAATTAATCATAGATGAGCAATTCAAACCTAAAA 114477 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 | || || | | | ||| | ||||| | ||| || |||| ||||| | || | Sbjct 114478 TTTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGTATTA 114537 Query 16149 TATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTT---AAACATTAGACACG 16205 | | || ||||| | |||| |||| | ||| | | | ||||| | Sbjct 114538 TTGAATAAACCTTTGAATCAGATAATTTATGTTTTAAATATTTCCTATATAAGAGACATG 114597 Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTG 16265 | || || ||||||| | || ||||| || |||||||| || |||||||| |||| Sbjct 114598 CAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAAGTTAAACCTG 114657 Query 16266 GCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATAC 16325 |||| | || || || ||||| ||||| || ||||| ||| || ||||| || | Sbjct 114658 GCATAATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCAGAGAAGAAAATCC 114717 Query 16326 CCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCC 16385 | ||||| |||||| || | ||||| || ||| | | | || || || | || Sbjct 114718 CTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTGAATTTTGATCATATATAT 114777 Query 16386 ATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA 16445 |||| | | ||||| | |||| | |||| || || || ||||| || ||||| | Sbjct 114778 ATTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGATGGTCTCTATTGCGTTAAAAA 114837 Query 16446 -ATTTCTCTTTTTCCTGAA-TATCGATTATAT--ACGTATCAATCAGTAAACTGTACATT 16501 || |||| |||| | | |||| ||| | || || | | ||| || ||||| Sbjct 114838 GATGATTCTT----CTGATCTGTAGATTCTATGAAAGTTTCTAATAATAAGCTATACATC 114893 Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 ||||| ||||| || || || | || ||||| | ||||| ||| ||| || ||| Sbjct 114894 TCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTCAATGATT 114953 Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 |||||||| |||| ||| || || ||| || || || || |||| Sbjct 114954 TGTACTTCTTGAATGAATCTTTCAATCAAATTATCACCAACAATTGTATCTGATGAAGCA 115013 Query 16622 AAAAACGC--CAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAAT 16679 ||||| || |||||||| | || |||| |||||| || ||||| || | | ||||| Sbjct 115014 AAAAATGCAAGAATATGTGAT--ATAAAATGTTTTTCATCTGATGTCAGCTTCTTCCAAT 115071 Query 16680 CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTT 16739 | | ||| || |||| ||| || ||||||| |||||||| || || | | || Sbjct 115072 GAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGATGCTACAGATTGTT 115131 Query 16740 TATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 ||||| | | ||| ||||| |||| ||| ||||||| Sbjct 115132 TATACTTGTACCATATATCGGGGTATAATATTGGAAATA 115170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511116769604560