Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1095 120 3e-22 >seq1095 Length=312686 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || ||||||| ||||| || |||||||| ||| ||| ||||| || Sbjct 81817 ATGCAGATTTTTGTCAAAACCTTGACTGGAAAAACCATCACCCTGGAAGTTGAACCTTCA 81876 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || ||||| ||||| | || || || Sbjct 81877 GATACTATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCACCCGACCAG 81936 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || ||||||||||| || || || |||||||||||| | || ||||| | || |||| Sbjct 81937 CAGAGACTTATCTTCGCTGGAAAGCAACTGGAAGATGGTAGAACACTAT--CAGACTACA 81994 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||||||||||| |||||| ||||| | ||| | || ||||| Sbjct 81995 ATATTCAGAAGGAATCTACACTTCACTTGGTGCTGCGACTCCGTGGAGG 82043 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || ||||||| ||||| || |||||||| ||| ||| ||||| || Sbjct 88638 ATGCAGATTTTTGTCAAAACCTTGACTGGAAAAACCATCACCCTGGAAGTTGAACCTTCA 88697 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || ||||| ||||| | || || || Sbjct 88698 GATACTATTGAGAATGTCAAGGCTAAGATCCAAGATAAGGAAGGAATTCCACCCGACCAG 88757 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || ||||||||||| || || || |||||||||||| | || ||||| | || |||| Sbjct 88758 CAGAGACTTATCTTCGCTGGAAAGCAACTGGAAGATGGTAGAACACTAT--CAGACTACA 88815 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||||||||||| |||||| ||||| | ||| | || ||||| Sbjct 88816 ATATTCAGAAGGAATCTACACTTCACTTGGTGCTGCGACTCCGTGGAGG 88864 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | ||||| |||| ||||| ||||| || ||| ||||| | Sbjct 81589 ATGCAGATATTCGTAAAAACTCTGACCGGCAAGACCATCACTTTGGAAGTTGAACCATCC 81648 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || || ||||| | ||| ||| || Sbjct 81649 GATACTATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAG 81708 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | ||||||||||| || || || || |||||| | ||| | | || ||||| Sbjct 81709 CAGCGTCTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTTTCTGACTACAAC 81768 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||| ||||||||| |||| || |||| || ||||| Sbjct 81769 ATTCAAAAGGAATCCACTCTTCACTTGGTTTTGAGATTGCGTGGAGG 81815 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | ||||| |||| ||||| ||||| || ||| ||||| | Sbjct 88410 ATGCAGATATTCGTAAAAACTCTGACCGGCAAGACCATCACTTTGGAAGTTGAACCATCC 88469 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || || ||||| | ||| ||| || Sbjct 88470 GATACTATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAG 88529 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | ||||||||||| || || || || |||||| | ||| | | || ||||| Sbjct 88530 CAGCGTCTTATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTTTCTGACTACAAC 88589 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||| ||||||||| |||| || |||| || ||||| Sbjct 88590 ATTCAAAAGGAATCCACTCTTCACTTGGTTTTGAGATTGCGTGGAGG 88636 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | ||||| ||||| || || |||||||| || ||| ||| || Sbjct 81361 ATGCAGATATTCGTGAAAACGTTGACAGGAAAGACCATTACATTGGAGGTGGAGCCCTCA 81420 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| || ||| ||||| ||||| | || || || Sbjct 81421 GACACGATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAAGGAATCCCACCTGACCAG 81480 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || || || || || ||||| ||||| ||| || || || | || |||||| Sbjct 81481 CAGCGCCTCATTTTCGCTGGTAAACAGCTGGAGGATGGCAGGACATTGTCAGACTACAAT 81540 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||||| ||||| ||||| || | ||||| || Sbjct 81541 ATTCAGAAAGAATCCACTCTCCATCTTGTGTTGCG 81575 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | ||||| ||||| || || |||||||| || ||| ||| || Sbjct 88182 ATGCAGATATTCGTGAAAACGTTGACAGGAAAGACCATTACATTGGAGGTGGAGCCCTCA 88241 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| || ||| ||||| ||||| | || || || Sbjct 88242 GACACGATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAAGGAATCCCACCTGACCAG 88301 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || || || || || ||||| ||||| ||| || || || | || |||||| Sbjct 88302 CAGCGCCTCATTTTCGCTGGTAAACAGCTGGAGGATGGCAGGACATTGTCAGACTACAAT 88361 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||||| ||||| ||||| || | ||||| || Sbjct 88362 ATTCAGAAAGAATCCACTCTCCATCTTGTGTTGCG 88396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428092951177490