Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq738 150 3e-31 seq1095 102 1e-16 seq347 89.7 8e-13 seq944 84.2 3e-11 >seq738 Length=407637 Score = 150 bits (166), Expect = 3e-31 Identities = 176/233 (76%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | | ||||| || || | ||| || || || || ||| || ||| | Sbjct 219475 ATGCAGATATTTGTTAGAACACTTACTGGGAGAACAATCACAATTGATATTAAATCAACT 219534 Query 124599 GATACAATT--TCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||||| |||||| |||| || | || |||||||||||||||| ||| |||| Sbjct 219535 GATACAATAGCTCTAAT--AAAAGAGTATATAAAAGATAAAGAAGGTATTCCAATAGATC 219592 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAA---GATT 124713 ||||| | || || ||| ||||||| |||||||| ||| || || ||| | | |||| Sbjct 219593 AACAACGTCTCATATTTTCAGGAAAGCAATTAGAAGAT--TC-AAGATTCGTAATGGATT 219649 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||||| ||||| || ||||| |||||| |||||||| | | || |||||| Sbjct 219650 ATAATATACAAAAGGATTCAACATTGCATCTGGTTTTAAGGCTTCGTGGTGGT 219702 >seq1095 Length=312686 Score = 102 bits (112), Expect = 1e-16 Identities = 121/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||||||||| ||||| || |||||||| || || | || ||||| || || ||| Sbjct 81445 AAGATTCAAGATAAGGAAGGAATCCCACCTGACCAGCAGCGCCTCATTTTCGCTGGTAAA 81504 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| | | ||||| ||| || |||||||| |||||||| ||| | ||| Sbjct 81505 CAGCTGGAGGATGGCAGGACATTGTCAGACTACAATATTCAGAAAGAATCCACTCTCCAT 81564 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTCATAAAAA 124784 | || || ||| | || ||||| || | | |||| |||||| Sbjct 81565 CTTGTGTTGCGTCTCCGTGGTGGCATGCAGATATTCGTAAAAA 81607 Score = 102 bits (112), Expect = 1e-16 Identities = 121/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||||||||| ||||| || |||||||| || || | || ||||| || || ||| Sbjct 88266 AAGATTCAAGATAAGGAAGGAATCCCACCTGACCAGCAGCGCCTCATTTTCGCTGGTAAA 88325 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| | | ||||| ||| || |||||||| |||||||| ||| | ||| Sbjct 88326 CAGCTGGAGGATGGCAGGACATTGTCAGACTACAATATTCAGAAAGAATCCACTCTCCAT 88385 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTCATAAAAA 124784 | || || ||| | || ||||| || | | |||| |||||| Sbjct 88386 CTTGTGTTGCGTCTCCGTGGTGGCATGCAGATATTCGTAAAAA 88428 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| ||||||| || || ||||| || || || | || | || | Sbjct 90461 AATGCAAATCTTTGTAAAGACTCTGACCGGCAAGACCATCACCTTGGAAGTGGAGCCCTC 90520 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || | || || || ||||| || || || || ||||| || || Sbjct 90521 CGATACCATTGAAAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCACCCGACCA 90580 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || ||||| || || ||||| ||| | |||||| || |||| | || || || Sbjct 90581 GCAGAGACTTATCTTCGCTGGAAAGCAACTGGAGGATGGTAGAACCCTGTCTGACTACAA 90640 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||||||||||| || | || |||||| Sbjct 90641 CATCCAAAAAGAATCTACACTCCACTTGGTT 90671 >seq347 Length=619498 Score = 89.7 bits (98), Expect = 8e-13 Identities = 162/239 (68%), Gaps = 16/239 (7%) Strand=Plus/Plus Query 59931 AAAGCATTTGATAATGTTGATAGAGAAATTTTATGGAATATAATGCATTTACATGGTTAT 59990 |||||||||||||||||||||||||| | | ||||| || ||| | |||| || Sbjct 54903 AAAGCATTTGATAATGTTGATAGAGAGCTACTCTGGAACATCATGATGACAAATGGATAC 54962 Query 59991 CCACCACATTTAATTAATGCtattaaaagtttatatgaaaatact------agaattatt 60044 || ||||||||| | | || |||| |||||| | |||||| |||| ||| Sbjct 54963 CCCAAACATTTAATCAGTAGCATAAAAACATTATATCACAATACTTCCATAAGAAGCATT 55022 Query 60045 gtaaaa----------tcaaaagtaataaaaataaataaaggaattaaaCAAGGATGTGC 60094 | |||| || | || |||| | |||||||||| | ||||| ||||| | Sbjct 55023 GGAAAATGGGGAATTGTCCAGAGAAATACTGACAAATAAAGGAGTAAAACAGGGATGCCC 55082 Query 60095 TGTTTCACTTTCATTATTTAATATTTATATCGATCATATTATGAATGAATGGAAACAAC 60153 |||||| | | | || ||||||||| | ||| | ||||| ||| ||| | |||| Sbjct 55083 AATTTCACCTGCCCTCTTCAATATTTATGTTGATGAGCTTATGCATGTGTGGCAGCAAC 55141 >seq944 Length=351154 Score = 84.2 bits (92), Expect = 3e-11 Identities = 175/258 (68%), Gaps = 17/258 (7%) Strand=Plus/Plus Query 59913 GCATTTATTGATTTTAAAAAAGCATTTGATAATGTTGATAGAGAAATTTTATGGAATATA 59972 || ||| | || || | |||||||||||||||||||||||||| | | ||||| || Sbjct 194077 GCCTTTGTAGACTTGGAGAAAGCATTTGATAATGTTGATAGAGAGCTACTCTGGAACATC 194136 Query 59973 ATGCATTTACATGGTTATCCACCACATTTAATTAATGCtattaaaagtttatatgaaaat 60032 ||| | |||| || || ||||||||| | | || |||| |||||| | ||| Sbjct 194137 ATGATGACAAATGGATACCCCAAACATTTAATCAGTAACATAAAAAAATTATATCACAAT 194196 Query 60033 act------agaat--tattgtaaaat---caaaagt-aataaaaat-----aaataaag 60075 ||| ||||| |||| ||||| || || | | |||| |||||||| Sbjct 194197 ACTTCCATAAGAATAACATTGGAAAATGGGGAATTGTCCAGAGAAATACTGAAAATAAAG 194256 Query 60076 gaattaaaCAAGGATGTGCTGTTTCACTTTCATTATTTAATATTTATATCGATCATATTA 60135 || | ||||| ||||| | |||||| | | | || ||||||||| | ||| | ||| Sbjct 194257 GAGTAAAACAGGGATGCCCAATTTCACCTGCCCTCTTCAATATTTATGTTGATGAGCTTA 194316 Query 60136 TGAATGAATGGAAACAAC 60153 || ||| ||| | |||| Sbjct 194317 TGCATGTGTGGCAGCAAC 194334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755016343494400