Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq71 111 3e-19 >seq71 Length=1040180 Score = 111 bits (122), Expect = 3e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 189417 AACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGG 189476 || |||| ||||| || ||||||||||| | | ||||| | || || ||||| || Sbjct 300717 AAGAACTGGAAAACGCAAAAACTCATGATGATTTGTGGAATTCAGCAGAAGTGCAGTTGT 300776 Query 189477 TGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAAT 189536 ||| ||| |||||||| ||| |||| | |||||||| ||||| |||||||| ||||||| Sbjct 300777 TGAAAGAGGGAAAAATACATGGTTTCCTGCGAATGTACTGGGCAAAGAAGATTCTTGAAT 300836 Query 189537 GGACTAGAACACCTGAAGACGC-TTTGAGTTATAGTATCTATTTGAACAACAAGTACGAA 189595 |||| | | |||||||| || |||| ||| || ||| | || | || ||| Sbjct 300837 GGACGACTTCCCCTGAAGAAGCACTTGAAATAT-CCATTTATCTCAATGATAAATACAGT 300895 Query 189596 CTAGACGGCACGGATCCTAACGGATACGTAGGT 189628 | || |||| ||||| ||||| | ||| ||| Sbjct 300896 ATGGATGGCAGAGATCCCAACGGTTTCGTTGGT 300928 Score = 104 bits (114), Expect = 4e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 189417 AACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGG 189476 || |||| ||||| || ||||||||||| | | ||||| | || || ||||| || Sbjct 313633 AAGAACTGGAAAACGCAAAAACTCATGATGATTTGTGGAATTCAGCAGAAGTGCAGTTGT 313692 Query 189477 TGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAAT 189536 ||| ||| |||||||| ||| |||| | |||||||| ||||| |||||||| ||||| | Sbjct 313693 TGAAAGAGGGAAAAATACATGGTTTCCTGCGAATGTACTGGGCAAAGAAGATTCTTGAGT 313752 Query 189537 GGACTAGAACACCTGAAGACGC 189558 |||| | | |||||||| || Sbjct 313753 GGACGACCTCCCCTGAAGAAGC 313774 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 189625 AGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAG-ACCGATAT 189683 ||| || |||||||| || || ||| |||||||| || ||| |||||| | || ||| Sbjct 301830 AGGGTGCATGTGGTCGATATGTGGAATACACGATCAAGGCTGGGCAGAAAGGAACG-TAT 301888 Query 189684 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTGTAT 189743 |||| ||||||||||| |||||||||| ||| ||| | |||||| ||||| || | || Sbjct 301889 TTGGTAAGATAAGATACATGAATTATGCTGGTTGTAAAAGGAAATTCGATGTAGCCGCAT 301948 Query 189744 TT 189745 || Sbjct 301949 TT 301950 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 189625 AGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAG-ACCGATAT 189683 ||| || |||||||| || || ||| |||||||| || ||| |||||| | || ||| Sbjct 316250 AGGGTGCATGTGGTCGATATGTGGAATACACGATCAAGGCTGGGCAGAAAGGAACG-TAT 316308 Query 189684 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTGTAT 189743 |||| ||||||||||| |||||||||| ||| ||| | |||||| ||||| || | || Sbjct 316309 TTGGTAAGATAAGATACATGAATTATGCTGGTTGTAAAAGGAAATTCGATGTAGCCGCAT 316368 Query 189744 TT 189745 || Sbjct 316369 TT 316370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922659522542320