Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1041 127 3e-24 seq2630 109 8e-19 seq1095 96.9 5e-15 seq738 96.9 5e-15 >seq1041 Length=325342 Score = 127 bits (140), Expect = 3e-24 Identities = 253/371 (68%), Gaps = 9/371 (2%) Strand=Plus/Plus Query 25937 TGTTATGAACACATTAAAGACTCATATTATTATGGTCTCTTTGGTGATTTTAAATTAGTT 25996 ||||| || |||||||||||| | | || ||||||| ||||| || || ||| | || Sbjct 170811 TGTTACGAGCACATTAAAGACACTTTTTGGAATGGTCTATTTGGAGACTTCAAACTGGTC 170870 Query 25997 ATAGATAAAACAACAGGTTGTTTTAATGCTACTAAGTTATGTAATTTAGGTGGTAAAAAA 26056 |||||||| | ||||| | |||||||| || ||||| || | | |||||| || || Sbjct 170871 ATAGATAAGGCTACAGGGTACTTTAATGCGACCAAGTTGTGCATTGAAGGTGGAAAGAAT 170930 Query 26057 TTTAAACAATGGAAACGTTTAGAAAAATCACAAGA-ATTAATAGATTATATTA--AAAAT 26113 | || ||| | | ||||||||||| || | || || || || | ||||| Sbjct 170931 TACTTTCATTGGGCAAGATTAGAAAAATCTAAAAATATGGTTAAATACTACCAGAAAAAT 170990 Query 26114 AACCG---AGGTGGGGATCCCCACCCCGGCTTTTATGAAACAAAAGGAGATAATAAAGAT 26170 | || | || ||| | | | || || |||| |||| | ||| |||||| Sbjct 170991 AGCCCTCCACATGTGGAGGGCAATTTC---TTATACGAAATCAAAGATGCTAACAAAGAT 171047 Query 26171 GAAAATGTTaaaaaaaTAACTGGTTGTTATGTACCCAAAGAAGTCATTTTAGATATATCG 26230 ||| || ||| |||| || ||| |||||||| |||||| | || | |||||| | Sbjct 171048 AAAATTGGAAAACAAATTACCGGTACGTATGTACCTAAAGAACTGATACTTGATATAGCC 171107 Query 26231 TCTTGGATATCTGTAGAATTTTATTTAAAATGTAATGACATAATTATAAATTATTATAAT 26290 || ||||| || ||||||||||| ||||||||| | || ||||| | || | | | Sbjct 171108 TCATGGATCTCCATAGAATTTTATGATAAATGTAATAAAATTATTATTGACTACTTTGTT 171167 Query 26291 ACTGAATTTAA 26301 | |||||||| Sbjct 171168 AACGAATTTAA 171178 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 95349 ATGTTATGAACACATTAAAGACTCATATTATTATGGTCTATTTGGTGATTTTAAATTAGT 95408 |||||| || |||||||||||| | | || ||||||||||||| || || ||| | || Sbjct 170810 ATGTTACGAGCACATTAAAGACACTTTTTGGAATGGTCTATTTGGAGACTTCAAACTGGT 170869 Query 95409 TATAGATAAAACTACAGGTTGTTTTAATGCTACTAAATTATGTAATTTAGGTGGTAAACA 95468 |||||||| ||||||| | |||||||| || || || || | | |||||| || | Sbjct 170870 CATAGATAAGGCTACAGGGTACTTTAATGCGACCAAGTTGTGCATTGAAGGTGGAAAGAA 170929 Query 95469 ATATAGAGATTGGAAACGTTTAGAAAAATCTaaa 95502 || ||||| | | ||||||||||||||| Sbjct 170930 TTACTTTCATTGGGCAAGATTAGAAAAATCTAAA 170963 >seq2630 Length=110644 Score = 109 bits (120), Expect = 8e-19 Identities = 240/353 (68%), Gaps = 9/353 (3%) Strand=Plus/Minus Query 96470 TGTTATGAACACATCAAAGACTCATATTATTATGGTTTATTTGGTGATTTTAAATTAGTT 96529 ||||| || ||||| |||||| | | || ||||| ||||||| || || ||| | || Sbjct 96143 TGTTACGAGCACATTAAAGACACTTTTTGGAATGGTCTATTTGGAGACTTCAAACTGGTC 96084 Query 96530 ATAGATAAAACCACAGGTTGTTTTAATGCTACTAAATTATGTAATTTATCAGGAAAAAGA 96589 |||||||| | ||||| | |||||||| || || || || | | | ||||| || Sbjct 96083 ATAGATAAGGCTACAGGGTACTTTAATGCGACCAAGTTGTGCATTGAAGGTGGAAA--GA 96026 Query 96590 TTTAGAA--ATTGGATTAGATTAGATAGATCTAAACAATTATTAAAATA-TATG-GAGAA 96645 ||| ||||| |||||||| | ||| ||| | | | ||||| || || || Sbjct 96025 ATTACTTTCATTGGGCAAGATTAGAAAAATCGAAAAAGATGGTTAAATACTACCAGAAAA 95966 Query 96646 TTACCGAAGCTCATATGTGAGCGTTGGATTTTAT--GAAGTTAAAGGTGATAATAATAAC 96703 |||| | ||| || ||| | | |||||| ||||| || | | || ||| | Sbjct 95965 ATACCCCTCCACATGTG-GAGGGCAGCTTTTTATACGAAGTCAAGCTTCAAAACAATGAT 95907 Query 96704 AAAACATCTAAAGAAATTACAGGTCAATATGTACCTAAAGAAGTTATTTTAGATATATCA 96763 ||| || | ||||||| ||| |||||||||||||||| | || | |||||| | Sbjct 95906 AAACTCAATAGACAAATTACTGGTACATATGTACCTAAAGAACTAATACTTGATATAGCT 95847 Query 96764 TCGTGGATATCTGTAGAATTTTATTTAAAATGTAATGATATAATTATAAATTA 96816 || ||||| || |||| |||||| ||||||||| | || || || || || Sbjct 95846 TCATGGATCTCCATAGAGTTTTATGATAAATGTAATAAAATTATCATCAACTA 95794 Score = 93.3 bits (102), Expect = 6e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 95329 AAAATGTCACTTAATAATATATGTTATGAACACATTAAAGACTCATATTATTATGGTCTA 95388 || ||||| || | || | ||||| || |||||||||||| | | || |||||||| Sbjct 96164 AACATGTCGCTACACAACACGTGTTACGAGCACATTAAAGACACTTTTTGGAATGGTCTA 96105 Query 95389 TTTGGTGATTTTAAATTAGTTATAGATAAAACTACAGGTTGTTTTAATGCTACTAAATTA 95448 ||||| || || ||| | || |||||||| ||||||| | |||||||| || || || Sbjct 96104 TTTGGAGACTTCAAACTGGTCATAGATAAGGCTACAGGGTACTTTAATGCGACCAAGTTG 96045 Query 95449 TGTAATTTAGGTGGTAAACAATATAGAGATTGGAAACGTTTAGAAAAATCTaaa 95502 || | | |||||| || | || ||||| | | ||||||||||| ||| Sbjct 96044 TGCATTGAAGGTGGAAAGAATTACTTTCATTGGGCAAGATTAGAAAAATCGAAA 95991 Score = 91.5 bits (100), Expect = 2e-13 Identities = 248/375 (66%), Gaps = 15/375 (4%) Strand=Plus/Minus Query 25936 GTGTTATGAACACATTAAAGACTCATATTATTATGGTCTCTTTGGTGATTTTAAATTAGT 25995 |||||| || |||||||||||| | | || ||||||| ||||| || || ||| | || Sbjct 96144 GTGTTACGAGCACATTAAAGACACTTTTTGGAATGGTCTATTTGGAGACTTCAAACTGGT 96085 Query 25996 TATAGATAAAACAACAGGTTGTTTTAATGCTACTAAGTTATGTAATTTAGGTGGTAAAAA 26055 |||||||| | ||||| | |||||||| || ||||| || | | |||||| || || Sbjct 96084 CATAGATAAGGCTACAGGGTACTTTAATGCGACCAAGTTGTGCATTGAAGGTGGAAAGAA 96025 Query 26056 ATTTAAACAATGGAAACGTTTAGAAAAATC--ACAAGA--ATTAATAGATTATATTAAAA 26111 | || ||| | | ||||||||||| | |||| |||| | | || |||| Sbjct 96024 TTACTTTCATTGGGCAAGATTAGAAAAATCGAAAAAGATGGTTAA-ATACTACCAGAAAA 95966 Query 26112 ATAAC---CGAGGTGGGGATCCCCACCCCGGCTTTTAT--GAAACAAAAGGAGATAATAA 26166 ||| | | | || ||| | | |||||| ||| || | || || Sbjct 95965 ATACCCCTCCACATGTGGA-----GGGCAGCTTTTTATACGAAGTCAAGCTTCAAAACAA 95911 Query 26167 AGATGAAAATGTTaaaaaaaTAACTGGTTGTTATGTACCCAAAGAAGTCATTTTAGATAT 26226 ||| || || | |||| |||||| |||||||| |||||| | || | ||||| Sbjct 95910 TGATAAACTCAATAGACAAATTACTGGTACATATGTACCTAAAGAACTAATACTTGATAT 95851 Query 26227 ATCGTCTTGGATATCTGTAGAATTTTATTTAAAATGTAATGACATAATTATAAATTATTA 26286 | | || ||||| || |||| |||||| ||||||||| | || || || || || | Sbjct 95850 AGCTTCATGGATCTCCATAGAGTTTTATGATAAATGTAATAAAATTATCATCAACTACTT 95791 Query 26287 TAATACTGAATTTAA 26301 | | |||||||| Sbjct 95790 TGTCAACGAATTTAA 95776 >seq1095 Length=312686 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/209 (68%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | |||||||| || ||||| || ||||| || ||||| | ||| || Sbjct 82025 ACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAGTCTGATAGTGTTCTACCATCTTCC 81966 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | ||| |||||||| || || | ||| ||||| || || ||||||||||| |||||||| Sbjct 81965 AGTTGCTTTCCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGAATTCCTTCCTTATCTTGG 81906 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 |||||||||| ||| ||||| || ||||| ||||| Sbjct 81905 ATCTTAGCCTTGACATTCTCAATAGTATCTGAAGGTTCAACTTCCAGGGTGATGGTTTTT 81846 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || ||||| | || || ||||| Sbjct 81845 CCAGTCAAGGTTTTGACAAAAATCTGCAT 81817 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/209 (68%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | |||||||| || ||||| || ||||| || ||||| | ||| || Sbjct 88846 ACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAGTCTGATAGTGTTCTACCATCTTCC 88787 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | ||| |||||||| || || | ||| ||||| || || ||||||||||| |||||||| Sbjct 88786 AGTTGCTTTCCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGAATTCCTTCCTTATCTTGG 88727 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 |||||||||| ||| ||||| || ||||| ||||| Sbjct 88726 ATCTTAGCCTTGACATTCTCAATAGTATCTGAAGGTTCAACTTCCAGGGTGATGGTTTTT 88667 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || ||||| | || || ||||| Sbjct 88666 CCAGTCAAGGTTTTGACAAAAATCTGCAT 88638 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| | |||||| | ||||| || | ||||||||||| || || || || Sbjct 90691 GTTCCACCACGAAGTCTGAGAACCAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAGTCA 90632 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || || ||||| | ||| || | ||| |||||||| || || | ||| ||||| || || Sbjct 90631 GACAGGGTTCTACCATCCTCCAGTTGCTTTCCAGCGAAGATAAGTCTCTGCTGGTCGGGT 90572 Query 146168 GGAATTCCTTCTTTATCTTG 146187 |||||||| || || ||||| Sbjct 90571 GGAATTCCCTCCTTGTCTTG 90552 >seq738 Length=407637 Score = 96.9 bits (106), Expect = 5e-15 Identities = 200/293 (68%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 10342 CTGCAGGAATGGATTTAAAAAGTGCATATGATTATATTGTTTCAGCACATGATAAAAAAT 10401 |||||||| | ||||| |||||||||||||||| | | | | |||||| | | Sbjct 273789 CTGCAGGATTTGATTTGGCTAGTGCATATGATTATAATATATTATCACATGGGAGGGGAC 273848 Query 10402 TAATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCA 10461 || | |||||||||||| || || | ||| || || |||| | | | || || | Sbjct 273849 TAGTTAAAACTGATTTACAGATCAAATTACCTCCTGGCTGCTATGGACGCATTGCCCCAA 273908 Query 10462 GATCTGATTTAGCTCT-AAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGAT 10520 |||||| || || | |||| | ||| ||||| ||||| || ||||| | ||| Sbjct 273909 GATCTGGCCTATCTTTGAAATTCA-ATATAAGTATTGAGGCTGGTGTTATTGATGCCGAT 273967 Query 10521 TATAGAGGAAATGTGGGAGTAATATTATT--TAATCATTCTAATGAAGATTTTATAATAA 10578 ||| | || ||| | ||||| ||||||| ||||| || || | || || | |||| Sbjct 273968 TATCGTGGTAATATTGGAGT--TATTATTCACAATCACTCAGATAATGAATTCAATATAA 274025 Query 10579 ATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCCTAAA 10631 | | || ||||| ||| | ||||| || ||||||| ||| || | || ||| Sbjct 274026 AACGTGGTGATAGGATAGCACAATTGATTTGTGAAAGAATAATAAACCCGAAA 274078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743093686223360