Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq1041 127 3e-24
seq2630 109 8e-19
seq1095 96.9 5e-15
seq738 96.9 5e-15
>seq1041
Length=325342
Score = 127 bits (140), Expect = 3e-24
Identities = 253/371 (68%), Gaps = 9/371 (2%)
Strand=Plus/Plus
Query 25937 TGTTATGAACACATTAAAGACTCATATTATTATGGTCTCTTTGGTGATTTTAAATTAGTT 25996
||||| || |||||||||||| | | || ||||||| ||||| || || ||| | ||
Sbjct 170811 TGTTACGAGCACATTAAAGACACTTTTTGGAATGGTCTATTTGGAGACTTCAAACTGGTC 170870
Query 25997 ATAGATAAAACAACAGGTTGTTTTAATGCTACTAAGTTATGTAATTTAGGTGGTAAAAAA 26056
|||||||| | ||||| | |||||||| || ||||| || | | |||||| || ||
Sbjct 170871 ATAGATAAGGCTACAGGGTACTTTAATGCGACCAAGTTGTGCATTGAAGGTGGAAAGAAT 170930
Query 26057 TTTAAACAATGGAAACGTTTAGAAAAATCACAAGA-ATTAATAGATTATATTA--AAAAT 26113
| || ||| | | ||||||||||| || | || || || || | |||||
Sbjct 170931 TACTTTCATTGGGCAAGATTAGAAAAATCTAAAAATATGGTTAAATACTACCAGAAAAAT 170990
Query 26114 AACCG---AGGTGGGGATCCCCACCCCGGCTTTTATGAAACAAAAGGAGATAATAAAGAT 26170
| || | || ||| | | | || || |||| |||| | ||| ||||||
Sbjct 170991 AGCCCTCCACATGTGGAGGGCAATTTC---TTATACGAAATCAAAGATGCTAACAAAGAT 171047
Query 26171 GAAAATGTTaaaaaaaTAACTGGTTGTTATGTACCCAAAGAAGTCATTTTAGATATATCG 26230
||| || ||| |||| || ||| |||||||| |||||| | || | |||||| |
Sbjct 171048 AAAATTGGAAAACAAATTACCGGTACGTATGTACCTAAAGAACTGATACTTGATATAGCC 171107
Query 26231 TCTTGGATATCTGTAGAATTTTATTTAAAATGTAATGACATAATTATAAATTATTATAAT 26290
|| ||||| || ||||||||||| ||||||||| | || ||||| | || | | |
Sbjct 171108 TCATGGATCTCCATAGAATTTTATGATAAATGTAATAAAATTATTATTGACTACTTTGTT 171167
Query 26291 ACTGAATTTAA 26301
| ||||||||
Sbjct 171168 AACGAATTTAA 171178
Score = 98.7 bits (108), Expect = 1e-15
Identities = 114/154 (74%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 95349 ATGTTATGAACACATTAAAGACTCATATTATTATGGTCTATTTGGTGATTTTAAATTAGT 95408
|||||| || |||||||||||| | | || ||||||||||||| || || ||| | ||
Sbjct 170810 ATGTTACGAGCACATTAAAGACACTTTTTGGAATGGTCTATTTGGAGACTTCAAACTGGT 170869
Query 95409 TATAGATAAAACTACAGGTTGTTTTAATGCTACTAAATTATGTAATTTAGGTGGTAAACA 95468
|||||||| ||||||| | |||||||| || || || || | | |||||| || |
Sbjct 170870 CATAGATAAGGCTACAGGGTACTTTAATGCGACCAAGTTGTGCATTGAAGGTGGAAAGAA 170929
Query 95469 ATATAGAGATTGGAAACGTTTAGAAAAATCTaaa 95502
|| ||||| | | |||||||||||||||
Sbjct 170930 TTACTTTCATTGGGCAAGATTAGAAAAATCTAAA 170963
>seq2630
Length=110644
Score = 109 bits (120), Expect = 8e-19
Identities = 240/353 (68%), Gaps = 9/353 (3%)
Strand=Plus/Minus
Query 96470 TGTTATGAACACATCAAAGACTCATATTATTATGGTTTATTTGGTGATTTTAAATTAGTT 96529
||||| || ||||| |||||| | | || ||||| ||||||| || || ||| | ||
Sbjct 96143 TGTTACGAGCACATTAAAGACACTTTTTGGAATGGTCTATTTGGAGACTTCAAACTGGTC 96084
Query 96530 ATAGATAAAACCACAGGTTGTTTTAATGCTACTAAATTATGTAATTTATCAGGAAAAAGA 96589
|||||||| | ||||| | |||||||| || || || || | | | ||||| ||
Sbjct 96083 ATAGATAAGGCTACAGGGTACTTTAATGCGACCAAGTTGTGCATTGAAGGTGGAAA--GA 96026
Query 96590 TTTAGAA--ATTGGATTAGATTAGATAGATCTAAACAATTATTAAAATA-TATG-GAGAA 96645
||| ||||| |||||||| | ||| ||| | | | ||||| || || ||
Sbjct 96025 ATTACTTTCATTGGGCAAGATTAGAAAAATCGAAAAAGATGGTTAAATACTACCAGAAAA 95966
Query 96646 TTACCGAAGCTCATATGTGAGCGTTGGATTTTAT--GAAGTTAAAGGTGATAATAATAAC 96703
|||| | ||| || ||| | | |||||| ||||| || | | || ||| |
Sbjct 95965 ATACCCCTCCACATGTG-GAGGGCAGCTTTTTATACGAAGTCAAGCTTCAAAACAATGAT 95907
Query 96704 AAAACATCTAAAGAAATTACAGGTCAATATGTACCTAAAGAAGTTATTTTAGATATATCA 96763
||| || | ||||||| ||| |||||||||||||||| | || | |||||| |
Sbjct 95906 AAACTCAATAGACAAATTACTGGTACATATGTACCTAAAGAACTAATACTTGATATAGCT 95847
Query 96764 TCGTGGATATCTGTAGAATTTTATTTAAAATGTAATGATATAATTATAAATTA 96816
|| ||||| || |||| |||||| ||||||||| | || || || || ||
Sbjct 95846 TCATGGATCTCCATAGAGTTTTATGATAAATGTAATAAAATTATCATCAACTA 95794
Score = 93.3 bits (102), Expect = 6e-14
Identities = 125/174 (72%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 95329 AAAATGTCACTTAATAATATATGTTATGAACACATTAAAGACTCATATTATTATGGTCTA 95388
|| ||||| || | || | ||||| || |||||||||||| | | || ||||||||
Sbjct 96164 AACATGTCGCTACACAACACGTGTTACGAGCACATTAAAGACACTTTTTGGAATGGTCTA 96105
Query 95389 TTTGGTGATTTTAAATTAGTTATAGATAAAACTACAGGTTGTTTTAATGCTACTAAATTA 95448
||||| || || ||| | || |||||||| ||||||| | |||||||| || || ||
Sbjct 96104 TTTGGAGACTTCAAACTGGTCATAGATAAGGCTACAGGGTACTTTAATGCGACCAAGTTG 96045
Query 95449 TGTAATTTAGGTGGTAAACAATATAGAGATTGGAAACGTTTAGAAAAATCTaaa 95502
|| | | |||||| || | || ||||| | | ||||||||||| |||
Sbjct 96044 TGCATTGAAGGTGGAAAGAATTACTTTCATTGGGCAAGATTAGAAAAATCGAAA 95991
Score = 91.5 bits (100), Expect = 2e-13
Identities = 248/375 (66%), Gaps = 15/375 (4%)
Strand=Plus/Minus
Query 25936 GTGTTATGAACACATTAAAGACTCATATTATTATGGTCTCTTTGGTGATTTTAAATTAGT 25995
|||||| || |||||||||||| | | || ||||||| ||||| || || ||| | ||
Sbjct 96144 GTGTTACGAGCACATTAAAGACACTTTTTGGAATGGTCTATTTGGAGACTTCAAACTGGT 96085
Query 25996 TATAGATAAAACAACAGGTTGTTTTAATGCTACTAAGTTATGTAATTTAGGTGGTAAAAA 26055
|||||||| | ||||| | |||||||| || ||||| || | | |||||| || ||
Sbjct 96084 CATAGATAAGGCTACAGGGTACTTTAATGCGACCAAGTTGTGCATTGAAGGTGGAAAGAA 96025
Query 26056 ATTTAAACAATGGAAACGTTTAGAAAAATC--ACAAGA--ATTAATAGATTATATTAAAA 26111
| || ||| | | ||||||||||| | |||| |||| | | || ||||
Sbjct 96024 TTACTTTCATTGGGCAAGATTAGAAAAATCGAAAAAGATGGTTAA-ATACTACCAGAAAA 95966
Query 26112 ATAAC---CGAGGTGGGGATCCCCACCCCGGCTTTTAT--GAAACAAAAGGAGATAATAA 26166
||| | | | || ||| | | |||||| ||| || | || ||
Sbjct 95965 ATACCCCTCCACATGTGGA-----GGGCAGCTTTTTATACGAAGTCAAGCTTCAAAACAA 95911
Query 26167 AGATGAAAATGTTaaaaaaaTAACTGGTTGTTATGTACCCAAAGAAGTCATTTTAGATAT 26226
||| || || | |||| |||||| |||||||| |||||| | || | |||||
Sbjct 95910 TGATAAACTCAATAGACAAATTACTGGTACATATGTACCTAAAGAACTAATACTTGATAT 95851
Query 26227 ATCGTCTTGGATATCTGTAGAATTTTATTTAAAATGTAATGACATAATTATAAATTATTA 26286
| | || ||||| || |||| |||||| ||||||||| | || || || || || |
Sbjct 95850 AGCTTCATGGATCTCCATAGAGTTTTATGATAAATGTAATAAAATTATCATCAACTACTT 95791
Query 26287 TAATACTGAATTTAA 26301
| | ||||||||
Sbjct 95790 TGTCAACGAATTTAA 95776
>seq1095
Length=312686
Score = 96.9 bits (106), Expect = 5e-15
Identities = 142/209 (68%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
||||| || | |||||||| || ||||| || ||||| || ||||| | ||| ||
Sbjct 82025 ACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAGTCTGATAGTGTTCTACCATCTTCC 81966
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188
| ||| |||||||| || || | ||| ||||| || || ||||||||||| ||||||||
Sbjct 81965 AGTTGCTTTCCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGAATTCCTTCCTTATCTTGG 81906
Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248
|||||||||| ||| ||||| || ||||| |||||
Sbjct 81905 ATCTTAGCCTTGACATTCTCAATAGTATCTGAAGGTTCAACTTCCAGGGTGATGGTTTTT 81846
Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277
|| || || ||||| | || || |||||
Sbjct 81845 CCAGTCAAGGTTTTGACAAAAATCTGCAT 81817
Score = 96.9 bits (106), Expect = 5e-15
Identities = 142/209 (68%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
||||| || | |||||||| || ||||| || ||||| || ||||| | ||| ||
Sbjct 88846 ACCAAGTGAAGTGTAGATTCCTTCTGAATATTGTAGTCTGATAGTGTTCTACCATCTTCC 88787
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188
| ||| |||||||| || || | ||| ||||| || || ||||||||||| ||||||||
Sbjct 88786 AGTTGCTTTCCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGAATTCCTTCCTTATCTTGG 88727
Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248
|||||||||| ||| ||||| || ||||| |||||
Sbjct 88726 ATCTTAGCCTTGACATTCTCAATAGTATCTGAAGGTTCAACTTCCAGGGTGATGGTTTTT 88667
Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277
|| || || ||||| | || || |||||
Sbjct 88666 CCAGTCAAGGTTTTGACAAAAATCTGCAT 88638
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
|||||||| | |||||| | ||||| || | ||||||||||| || || || ||
Sbjct 90691 GTTCCACCACGAAGTCTGAGAACCAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAGTCA 90632
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
|| || ||||| | ||| || | ||| |||||||| || || | ||| ||||| || ||
Sbjct 90631 GACAGGGTTCTACCATCCTCCAGTTGCTTTCCAGCGAAGATAAGTCTCTGCTGGTCGGGT 90572
Query 146168 GGAATTCCTTCTTTATCTTG 146187
|||||||| || || |||||
Sbjct 90571 GGAATTCCCTCCTTGTCTTG 90552
>seq738
Length=407637
Score = 96.9 bits (106), Expect = 5e-15
Identities = 200/293 (68%), Gaps = 6/293 (2%)
Strand=Plus/Plus
Query 10342 CTGCAGGAATGGATTTAAAAAGTGCATATGATTATATTGTTTCAGCACATGATAAAAAAT 10401
|||||||| | ||||| |||||||||||||||| | | | | |||||| | |
Sbjct 273789 CTGCAGGATTTGATTTGGCTAGTGCATATGATTATAATATATTATCACATGGGAGGGGAC 273848
Query 10402 TAATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCA 10461
|| | |||||||||||| || || | ||| || || |||| | | | || || |
Sbjct 273849 TAGTTAAAACTGATTTACAGATCAAATTACCTCCTGGCTGCTATGGACGCATTGCCCCAA 273908
Query 10462 GATCTGATTTAGCTCT-AAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGAT 10520
|||||| || || | |||| | ||| ||||| ||||| || ||||| | |||
Sbjct 273909 GATCTGGCCTATCTTTGAAATTCA-ATATAAGTATTGAGGCTGGTGTTATTGATGCCGAT 273967
Query 10521 TATAGAGGAAATGTGGGAGTAATATTATT--TAATCATTCTAATGAAGATTTTATAATAA 10578
||| | || ||| | ||||| ||||||| ||||| || || | || || | ||||
Sbjct 273968 TATCGTGGTAATATTGGAGT--TATTATTCACAATCACTCAGATAATGAATTCAATATAA 274025
Query 10579 ATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCCTAAA 10631
| | || ||||| ||| | ||||| || ||||||| ||| || | || |||
Sbjct 274026 AACGTGGTGATAGGATAGCACAATTGATTTGTGAAAGAATAATAAACCCGAAA 274078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743093686223360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |