Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq738 325 4e-84 seq2120 143 2e-29 >seq738 Length=407637 Score = 325 bits (360), Expect = 4e-84 Identities = 629/907 (69%), Gaps = 41/907 (5%) Strand=Plus/Plus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||| ||||| ||||| ||||||||||||||| || |||||||||||||||||||| || Sbjct 114281 ATTAGACATTACTGATGATTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTT 114340 Query 15985 -TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAAT---AGTATT 16040 | || ||||||||||| ||||| ||||| |||||||| | ||||| | | | || Sbjct 114341 ATTAATC-AATGAAATATTATCCATGAAATCCAAAGGATTAT--GAACATTGTAAATCTT 114397 Query 16041 T--ATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCAT 16098 | || |||| | ||| | ||||||||||| || |||||| |||||| | |||| Sbjct 114398 TGAAT---ATCCAAGTTCAATTAATAATCTATCAGCAACAAATCTTATATAATTAATCAT 114454 Query 16099 TAAATCA-CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAttttttt 16157 | || | || |||| |||| | || ||| || | || ||||| | ||| | | || Sbjct 114455 -AGATGAGCAATTCAAACCTAAAATTTCAACGGGTAATGACTCTGTCAGAAATTCTCCTT 114513 Query 16158 CTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAA-CGGAGGGTTTAA- 16215 | |||| ||| ||||| ||||| | | || || || || | || |||| Sbjct 114514 CAATATCAACTGCTTCCTGTATTAT-----TGAATAAACCTTTGAATCAGATAATTTATG 114568 Query 16216 ---TAAGTGTTT---AAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACT 16269 ||| | ||| | | | | ||| ||||| |||||||| || | || || ||||| Sbjct 114569 TTTTAAATATTTCCTATATAAGAGACATGCAAATTCACAATGTAAGGCCTCATCTCTACT 114628 Query 16270 TATTAACTCGTT--TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAAT 16327 ||| | || || ||||| | ||| ||||||||| | || ||||| | ||||||| Sbjct 114629 TATAAGTTCATTACTGAAAGT-TAA-ACCTGGCATAATATTACGCTTTTTCAACCAAAAT 114686 Query 16328 ATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGC 16387 || || ||||| ||||| ||||| || |||||||| | ||||| || ||||||||| Sbjct 114687 ATTGCTGCAAAACTCCCAGAGAAGAAAATCCCTTCAACCACTGCAAACGCTACCAATCGC 114746 Query 16388 TCACCGTACGTTCTAtttttactttctatccattttttagccca-atttgctttttgttt 16446 || || | || ||||| | | ||| |||| || ||||| ||| |||||| || Sbjct 114747 TCTGCGAAACTTGAATTTTGATCATATATATATTTATTTGCCCATATTCCCTTTTTTCTT 114806 Query 16447 AACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAAT 16506 | || ||| |||||||||| ||||| | || ||| || | | || | || Sbjct 114807 ATTGAAG-GGATGGTCTCTATTGCGTTAAAAAGATGATTCTTCTGATCTGTAGATTCTAT 114865 Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566 |||| |||| || ||| |||||||| |||||||| ||||| ||||| | || ||||| Sbjct 114866 GAAAGTTTCTAATAATAAGCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAA 114925 Query 16567 ACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGT 16625 || || || |||||||||| ||||||||||| || | || ||||| || | Sbjct 114926 ACTGTAGAAAAATCTAGCTTCAATGATTTGTACTTCTTGAAT-GAATCTTTCAATCAAAT 114984 Query 16626 TTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttt 16685 | || ||| ||| ||| | |||||||| ||||| || ||| ||||||| || Sbjct 114985 TATCACCAACAATTGTATCTGATGAAGCAAAAAATGCAAGAATATGTGATATAAAATGTT 115044 Query 16686 tttCGTTATCTGA---AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTT 16742 |||| |||||| || || ||| | || || ||| || |||| ||||||||||| Sbjct 115045 TTTC---ATCTGATGTCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTT 115101 Query 16743 CTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAA 16802 || ||||||||||| || |||| | ||||||| | | |||||| || ||| | | Sbjct 115102 CTGTGGTCCAAAAAGATGCTACAGATTGTTTATACTTGTACCATATATCGGGGTATAATA 115161 Query 16803 TAGGAAA 16809 | ||||| Sbjct 115162 TTGGAAA 115168 >seq2120 Length=154726 Score = 143 bits (158), Expect = 2e-29 Identities = 237/338 (70%), Gaps = 8/338 (2%) Strand=Plus/Minus Query 16458 TGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTA 16517 || |||||||||| ||||| | || ||| || | | || | || |||| |||| Sbjct 146123 TGGTCTCTATTGCGTTAAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTA 146064 Query 16518 TTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGC 16577 || ||| |||||||| |||||||| ||||| ||||| | || ||||||| || || Sbjct 146063 ATAATAAGCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAA 146004 Query 16578 ATCTAGCTTCGGATATTTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACT 16636 |||||||||| ||||||||||| || | || | |||| || || || ||| Sbjct 146003 ATCTAGCTTCAATGATTTGTACTTCTTGAATGAATC-TTTCAATCAAATTATCACCAACA 145945 Query 16637 ATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCT 16696 ||| ||| | |||||||| ||||| || ||| ||||||| |||||| |||| Sbjct 145944 ATTGTATCTGATGAAGCAAAAAATGCAAGAATATGTGATATAAAATGTTTTTC---ATCT 145888 Query 16697 GAA---AGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAA 16753 || || || ||| | || || ||| || |||| ||||||||||||| ||||| Sbjct 145887 GATGTCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAG 145828 Query 16754 AAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 ||||| || |||| | ||||||| | | |||||| || Sbjct 145827 AAAGATGCTACAGATTGTTTATACTTGTACCATATATC 145790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462242829578800