Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_002667.1
Length=41834
Score E
Sequences producing significant alignments: (Bits) Value
seq13052 306 1e-78
seq12081 118 3e-22
>seq13052
Length=1690
Score = 306 bits (338), Expect = 1e-78
Identities = 255/312 (82%), Gaps = 0/312 (0%)
Strand=Plus/Minus
Query 38634 AAGGGAGAATTCACGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCA 38693
|||||||| || | | |||||||||| || ||||||| | | ||| | || || |
Sbjct 1668 AAGGGAGAGTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCG 1609
Query 38694 AATTTAATACTTCTAAACGAAAGTTTAGAACAAGTTATTGTCAGTAAGAATTTAACATTT 38753
|| ||||||||||| || ||| | ||| || ||||| ||||| ||||| | || |||
Sbjct 1608 AACTTAATACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTT 1549
Query 38754 ATATCAGATGATTCTACAGTTACAGATTTAGCTCGAGAAGTGAATAATAAGATTGATGAT 38813
||||||||| ||||||| |||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1548 ATATCAGATAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGAT 1489
Query 38814 TTTACAAAATTATTATTTGAAAACATGCCACAAGTGTTGCGTAGTGAGTTAGATGATTTA 38873
||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||| |||
Sbjct 1488 TTTACAAAATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTA 1429
Query 38874 AATGCTCAAACTGAATCAAATAAGAGTAATATTGAGCTTAAAGCAAATTTAGCTGATATG 38933
||||||||||||||||||| ||||| ||||||||||||||||| ||| | | || ||
Sbjct 1428 CATGCTCAAACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAATCAAACAGACTTG 1369
Query 38934 ACGAGCTTACAA 38945
| | |||||||
Sbjct 1368 AACAACTTACAA 1357
Score = 84.2 bits (92), Expect = 6e-12
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 39245 AAATCAAGCTGAAACTGATGTCAAAACAGCAATAACAAAGGCTACCGAAGCGCAAGCGAA 39304
||| |||||||||| ||| | ||||| ||||| |||||||||||||||| ||||||||
Sbjct 1258 AAAACAAGCTGAAAGTGAAGCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAA 1199
Query 39305 CAGTTTACCAC 39315
||||||| |||
Sbjct 1198 CAGTTTAACAC 1188
>seq12081
Length=2162
Score = 118 bits (130), Expect = 3e-22
Identities = 88/100 (88%), Gaps = 5/100 (5%)
Strand=Plus/Minus
Query 39898 CATGGGAAAATATCGGTTCAGCAGTAGTTGGTTCAACAACAATATATTATTGGCAACGCA 39957
||||| ||||||||||||| | |||| |||||||||||||||||||||||||| ||||||
Sbjct 1959 CATGGCAAAATATCGGTTCGGTAGTAATTGGTTCAACAACAATATATTATTGGAAACGCA 1900
Query 39958 CTGCATaaaaatataaaaaataggagaa-aaaaCATGAAA 39996
||||||||||| |||||| |||| || |||| ||||||
Sbjct 1899 CTGCATAAAAA-ATAAAA---AGGAAAATAAAAAATGAAA 1864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133673254349616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |