Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_002667.1 Length=41834 Score E Sequences producing significant alignments: (Bits) Value seq13052 306 1e-78 seq12081 118 3e-22 >seq13052 Length=1690 Score = 306 bits (338), Expect = 1e-78 Identities = 255/312 (82%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 38634 AAGGGAGAATTCACGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCA 38693 |||||||| || | | |||||||||| || ||||||| | | ||| | || || | Sbjct 1668 AAGGGAGAGTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCG 1609 Query 38694 AATTTAATACTTCTAAACGAAAGTTTAGAACAAGTTATTGTCAGTAAGAATTTAACATTT 38753 || ||||||||||| || ||| | ||| || ||||| ||||| ||||| | || ||| Sbjct 1608 AACTTAATACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTT 1549 Query 38754 ATATCAGATGATTCTACAGTTACAGATTTAGCTCGAGAAGTGAATAATAAGATTGATGAT 38813 ||||||||| ||||||| |||||||||||||||| |||||| |||||||||||||||||| Sbjct 1548 ATATCAGATAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGAT 1489 Query 38814 TTTACAAAATTATTATTTGAAAACATGCCACAAGTGTTGCGTAGTGAGTTAGATGATTTA 38873 ||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||| ||| Sbjct 1488 TTTACAAAATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTA 1429 Query 38874 AATGCTCAAACTGAATCAAATAAGAGTAATATTGAGCTTAAAGCAAATTTAGCTGATATG 38933 ||||||||||||||||||| ||||| ||||||||||||||||| ||| | | || || Sbjct 1428 CATGCTCAAACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAATCAAACAGACTTG 1369 Query 38934 ACGAGCTTACAA 38945 | | ||||||| Sbjct 1368 AACAACTTACAA 1357 Score = 84.2 bits (92), Expect = 6e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 39245 AAATCAAGCTGAAACTGATGTCAAAACAGCAATAACAAAGGCTACCGAAGCGCAAGCGAA 39304 ||| |||||||||| ||| | ||||| ||||| |||||||||||||||| |||||||| Sbjct 1258 AAAACAAGCTGAAAGTGAAGCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAA 1199 Query 39305 CAGTTTACCAC 39315 ||||||| ||| Sbjct 1198 CAGTTTAACAC 1188 >seq12081 Length=2162 Score = 118 bits (130), Expect = 3e-22 Identities = 88/100 (88%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 39898 CATGGGAAAATATCGGTTCAGCAGTAGTTGGTTCAACAACAATATATTATTGGCAACGCA 39957 ||||| ||||||||||||| | |||| |||||||||||||||||||||||||| |||||| Sbjct 1959 CATGGCAAAATATCGGTTCGGTAGTAATTGGTTCAACAACAATATATTATTGGAAACGCA 1900 Query 39958 CTGCATaaaaatataaaaaataggagaa-aaaaCATGAAA 39996 ||||||||||| |||||| |||| || |||| |||||| Sbjct 1899 CTGCATAAAAA-ATAAAA---AGGAAAATAAAAAATGAAA 1864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133673254349616