Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_002703.1
Length=38347
Score E
Sequences producing significant alignments: (Bits) Value
seq13052 378 2e-100
seq12081 111 4e-20
>seq13052
Length=1690
Score = 378 bits (418), Expect = 2e-100
Identities = 271/312 (87%), Gaps = 0/312 (0%)
Strand=Plus/Minus
Query 34481 AAGGGAGAATTCACGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCA 34540
|||||||| || | | |||||||||| || ||||||| | | ||| | || || |
Sbjct 1668 AAGGGAGAGTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCG 1609
Query 34541 AATTTAATACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGTAAGAATCTTACATTT 34600
|| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1608 AACTTAATACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTT 1549
Query 34601 ATATCAGATGATTCTACAGTTACAAGTTTAACTCAAGAAGTAAATAATAAGATTGATGAT 34660
||||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||||
Sbjct 1548 ATATCAGATAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGAT 1489
Query 34661 TTTACAAAATTATTATTGGAAAATATGCCACAGGTTATGCGTAGTGAGTTGAATGATTTA 34720
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 1488 TTTACAAAATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTA 1429
Query 34721 CATGCTCAAACTGATTCAAACAAGAGCAATATTGAGCTTAAAGCAAATTTAGCTGATATG 34780
|||||||||||||| ||||||||||||||||||||||||||||| ||| | | || ||
Sbjct 1428 CATGCTCAAACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAATCAAACAGACTTG 1369
Query 34781 ACGAGCTTACAA 34792
| | |||||||
Sbjct 1368 AACAACTTACAA 1357
Score = 176 bits (194), Expect = 1e-39
Identities = 106/112 (95%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 35210 TTAAGTACAAATCAAAATGTCGCAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 35269
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1299 TTAATCACAAATCAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 1240
Query 35270 GCCAAAAATGCAATGGCAAAGGCTACCAAAGCACAAGCGAACAGTTTACCAC 35321
||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1239 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTAACAC 1188
>seq12081
Length=2162
Score = 111 bits (122), Expect = 4e-20
Identities = 88/103 (85%), Gaps = 6/103 (6%)
Strand=Plus/Minus
Query 36213 CATGGCAGAACATCGGTTCAGCAGTAATTGGTTCAACGACAATATATTATTGGCAACGCA 36272
||||||| || |||||||| | ||||||||||||||| ||||||||||||||| ||||||
Sbjct 1959 CATGGCAAAATATCGGTTCGGTAGTAATTGGTTCAACAACAATATATTATTGGAAACGCA 1900
Query 36273 CTGCATAAAAATATAAAAAATAGGAGAGTAAAATGAATCAAAT 36315
||||||||||| |||||| |||| | ||||| ||| ||||
Sbjct 1899 CTGCATAAAAA-ATAAAA---AGGAAAATAAAA--AATGAAAT 1863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122521023563964
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |