Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1095 113 4e-20 seq1979 82.4 6e-11 >seq1095 Length=312686 Score = 113 bits (124), Expect = 4e-20 Identities = 172/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || | ||| || | |||||||| || ||| ||||||||| ||||||||||| | Sbjct 84693 CCTCCACGCAACCTCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 84634 Query 45170 AG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 || | || ||| ||| || || |||||||| || || | | ||| |||||||| Sbjct 84633 AGGGTTCTGCCATCCTCG---AGCTGCTTTCCGGCAAAGATGAGTCTCTGCTGGTCGGGT 84577 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | ||||||||||| || || ||| || | | | ||||| |||| Sbjct 84576 GGAATTCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCAATCGTGTCCGACGGCTCC 84517 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC--CTC 45344 ||||||| ||||| |||||||| |||| || ||||||||||| ||||| |||| ||| Sbjct 84516 ACCTCCAACGTAATTGTCTTGCCGGTCAACGTTTTCACAAAGATCTGCATTTTGCTGCTC 84457 Query 45345 AAT 45347 ||| Sbjct 84456 AAT 84454 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || | ||| || ||| || ||||| ||||||||||| ||| | | || Sbjct 89305 AACACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAGTGTTCTGCCATCT 89246 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || ||||| ||||| || | ||||| || || ||||| | ||| |||||||| Sbjct 89245 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATACCTTCCTTGTCT 89186 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | |||| ||| || |||| ||| || ||| Sbjct 89185 TGAATCTTAGCCTTGACATTCTCGATAGTGTCTGATGGCTCTACTTCCAGGGTGATGGTC 89126 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||||||||| |||||||||||||| Sbjct 89125 TTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 89094 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || | ||| || ||| || ||||| ||||||||||| ||| | | || Sbjct 89533 AACACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAGTGTTCTGCCATCT 89474 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || ||||| ||||| || | ||||| || || ||||| | ||| |||||||| Sbjct 89473 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATACCTTCCTTGTCT 89414 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | |||| ||| || |||| ||| || ||| Sbjct 89413 TGAATCTTAGCCTTGACATTCTCGATAGTGTCTGATGGCTCTACTTCCAGGGTGATGGTC 89354 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||||||||| |||||||||||||| Sbjct 89353 TTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 89322 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || | ||| || ||| || ||||| ||||||||||| ||| | | || Sbjct 89761 AACACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAGTGTTCTGCCATCT 89702 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || ||||| ||||| || | ||||| || || ||||| | ||| |||||||| Sbjct 89701 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATACCTTCCTTGTCT 89642 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | |||| ||| || |||| ||| || ||| Sbjct 89641 TGAATCTTAGCCTTGACATTCTCGATAGTGTCTGATGGCTCTACTTCCAGGGTGATGGTC 89582 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||||||||| |||||||||||||| Sbjct 89581 TTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 89550 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || | ||| || ||| || ||||| ||||||||||| ||| | | || Sbjct 89989 AACACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAGTGTTCTGCCATCT 89930 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || ||||| ||||| || | ||||| || || ||||| | ||| |||||||| Sbjct 89929 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATACCTTCCTTGTCT 89870 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | |||| ||| || |||| ||| || ||| Sbjct 89869 TGAATCTTAGCCTTGACATTCTCGATAGTGTCTGATGGCTCTACTTCCAGGGTGATGGTC 89810 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||||||||| |||||||||||||| Sbjct 89809 TTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 89778 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || | ||| || ||| || ||||| ||||||||||| ||| | | || Sbjct 90217 AACACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAGTGTTCTGCCATCT 90158 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || ||||| ||||| || | ||||| || || ||||| | ||| |||||||| Sbjct 90157 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATACCTTCCTTGTCT 90098 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | |||| ||| || |||| ||| || ||| Sbjct 90097 TGAATCTTAGCCTTGACATTCTCGATAGTGTCTGATGGCTCTACTTCCAGGGTGATGGTC 90038 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||||||||| |||||||||||||| Sbjct 90037 TTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 90006 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || | ||| || ||| || ||||| ||||||||||| ||| | | || Sbjct 90445 AACACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGATAGTGTTCTGCCATCT 90386 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || ||||| ||||| || | ||||| || || ||||| | ||| |||||||| Sbjct 90385 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATACCTTCCTTGTCT 90326 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | |||| ||| || |||| ||| || ||| Sbjct 90325 TGAATCTTAGCCTTGACATTCTCGATAGTGTCTGATGGCTCTACTTCCAGGGTGATGGTC 90266 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||||||||| |||||||||||||| Sbjct 90265 TTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 90234 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 45149 TTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||| ||||||||||| ||| | || ||| ||| || || |||||||| || Sbjct 78071 TTCTGGATGTTGTAGTCAGACAGGGTTCTGCCATCTTCG---AGCTGCTTTCCGGCAAAA 78015 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | | ||| |||||||| || | ||||||||||| || || ||| || | Sbjct 78014 ATAAGTCTCTGCTGGTCGGGTGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTTACATTC 77955 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| ||||||||||| ||||| |||||||| |||| || |||||| Sbjct 77954 TCAATCGTGTCCGACGGCTCCACCTCCAACGTAATTGTCTTGCCGGTCAACGTTTTCACA 77895 Query 45326 AAGATTTGCATGTTGC--CTCAAT 45347 ||||| ||||| |||| |||||| Sbjct 77894 AAGATCTGCATTTTGCTGCTCAAT 77871 >seq1979 Length=171087 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| || ||||||||| |||||||||||| ||| ||| |||| ||||| || Sbjct 87757 TGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTGC 87816 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || |||||||| ||||| |||||||| ||||| || Sbjct 87817 TTGCCGGCGAAGATCAAACGCTGTTGATCGGGCGG 87851 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| || ||||||||| |||||||||||| ||| ||| |||| ||||| || Sbjct 152562 TGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTGC 152621 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || |||||||| ||||| |||||||| ||||| || Sbjct 152622 TTGCCGGCGAAGATCAAACGCTGTTGATCGGGCGG 152656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394851024207718