Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq738 277 2e-69 seq2120 123 2e-23 >seq738 Length=407637 Score = 277 bits (306), Expect = 2e-69 Identities = 608/886 (69%), Gaps = 35/886 (4%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||||||||||||||| || || ||||||||||| || || ||| || ||| ||||| Sbjct 114299 TTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATCAATGAAATATT 114358 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATA--AACACTTTATCACAACCTAGTTCTAAT 14029 ||||| ||||| || ||||| | |||| || |||| | | || ||||| | | Sbjct 114359 ATCCATGAAATCCAAAGGATTA-TGAACATTGTAAATCTTTGA-ATATCCAAGTTCAATT 114416 Query 14030 AGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCA-CAATTCATACCTAT 14088 | ||||||||| |||| || ||||| | | ||| | || | ||||||| ||||| Sbjct 114417 AATAATCTATCAGCAACAAATCTTATATAATTAATCAT-AGATGAGCAATTCAAACCTAA 114475 Query 14089 TAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTAT 14148 | || || || | | | || | ||||||| ||| ||| || || || | ||| Sbjct 114476 AATTTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGTAT 114535 Query 14149 AAT--AATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA---A 14203 || ||| || || || ||| || ||||| || ||| | ||| | Sbjct 114536 TATTGAATA--AACCTTTGAATCAGATAATTTATGTTTTAAATATTTCCTATATAAGAGA 114593 Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTA 14261 || ||||| |||||||| | | ||||||||||||| |||||||| || ||||| |||| Sbjct 114594 CATGCAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAA--GTTA 114651 Query 14262 ATCCTGGCATCAATCCT-CGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 | |||||||| ||| | || ||||| |||||||||||||| || || || || ||| Sbjct 114652 AACCTGGCAT-AATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCAGAGAAG 114710 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || || ||||| | |||||||||| ||||| ||| | || || |||| | Sbjct 114711 AAAATCCCTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTGAATTTTGATCA 114770 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 |||| |||| | |||||| |||||| | || || || || || || || Sbjct 114771 TATATATATTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGATGGTCTCTATTGCG 114830 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATC-AATAAGTAAGCTATA 14499 ||||| | ||| | ||||| | ||| | ||| | || || ||||| ||||||||| Sbjct 114831 TTAAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAA-TAAGCTATA 114889 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC--T 14557 ||| || || ||||| |||||||||| || ||||||| || ||| |||||||||| | Sbjct 114890 CATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTCAAT 114949 Query 14558 GACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14616 || |||||| || ||| | |||||||| |||||| ||| ||| || ||| Sbjct 114950 GA--TTTGTACTTCTTGAAT-GAATCTTTCAATCAAATTATCACCAACAATTGTATCTGA 115006 Query 14617 AGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTG--AGTT 14672 | ||||||||||| ||||||| | ||||| | || || || || || || | Sbjct 115007 TGAAGCAAAAAATGCAAGAATATGTGAT--ATAAAATGTTTTTCATC--TGATGTCAGCT 115062 Query 14673 TTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAA 14732 | ||||||| | | ||||||||| ||||| || || || ||||||||| || | Sbjct 115063 TCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGATGCTA 115122 Query 14733 CAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14778 ||| || ||||||| | |||||| || |||||||| ||||| Sbjct 115123 CAGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGGAAA 115168 >seq2120 Length=154726 Score = 123 bits (136), Expect = 2e-23 Identities = 249/358 (70%), Gaps = 16/358 (4%) Strand=Plus/Minus Query 14429 GTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATC-AAT 14487 || || || || ||||| | ||| | ||||| | ||| | ||| | || || ||| Sbjct 146121 GTCTCTATTGCGTTAAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAAT 146062 Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547 || |||||||||||| || || ||||| |||||||||| || ||||||| || ||| | Sbjct 146061 AA-TAAGCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAA 146003 Query 14548 TCTAGCTTC--TGACCATTGTACCTCT-GAGTAAAATCTTTCGGCCAAATTTTCATTAAC 14604 ||||||||| ||| |||||| ||| || | || |||||| |||||| ||| ||| Sbjct 146002 TCTAGCTTCAATGAT--TTGTACTTCTTGAATGAA-TCTTTCAATCAAATTATCACCAAC 145946 Query 14605 TATACCATCACTAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCA 14662 || ||| | ||||||||||| ||||||| | ||||| | || || || Sbjct 145945 AATTGTATCTGATGAAGCAAAAAATGCAAGAATATGTGAT--ATAAAATGTTTTTCATC- 145889 Query 14663 TTGCTG--AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCC 14720 || || || || ||||||| | | ||||||||| ||||| || || || |||| Sbjct 145888 -TGATGTCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCC 145830 Query 14721 AAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14778 | ||| || |||| || ||||||| | |||||| || |||||||| | ||| Sbjct 145829 AGAAAGATGCTACAGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGAAAA 145772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482064886919440