Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq738 241 2e-58 >seq738 Length=407637 Score = 241 bits (266), Expect = 2e-58 Identities = 577/869 (66%), Gaps = 13/869 (1%) Strand=Plus/Plus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 |||||| ||||||| ||| | ||||| || ||||| || || |||||| ||||| Sbjct 114299 TTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATCAATGAAATATT 114358 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 ||||||||||| || ||||| |||||||||||| ||| | |||| | |||| | Sbjct 114359 ATCCATGAAATCCAAAGGATTATGAACATTGTAAATCTTTGAATATCCAAGTTCAATTAA 114418 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 |||||||| || || ||| |||||| | |||| | ||||||| |||| | Sbjct 114419 TAATCTATCAGCAACAAATCTTATATAATTAATCATAGATGAGCAATTCAAACCTAAAAT 114478 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCAT-TTGTTATAA 33528 || ||| || | | | | || ||||||||| |||||| || || | ||| || Sbjct 114479 TTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGTATTAT 114538 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTT---TAAACATCAAACATG 33585 | ||| ||| || ||| | |||| ||||| || || | | | ||||| Sbjct 114539 TGAAT-AAACCTTTGAATCAGATAATTTATGTTTTAAATATTTCCTATATAAGAGACATG 114597 Query 33586 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645 | || || || || | |||| |||||||| || | ||| ||| || || | || | Sbjct 114598 CAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAAGTTAAACCTG 114657 Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTC 33705 |||| | ||||||||| | ||||||||| | || || || || ||||| || | Sbjct 114658 GCATAATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCAGAGAAGAAAATCC 114717 Query 33706 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCC 33762 |||| || | ||||| || | | || |||| | ||| | | |||| ||| Sbjct 114718 CTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTGAATTTTGATCATATATAT 114777 Query 33763 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33822 | || | ||||| |||| ||| ||| |||| || || ||||| || ||||| | Sbjct 114778 ATTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGATGGTCTCTATTGCGTTAAAAA 114837 Query 33823 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33882 ||| || || | || || || | |||| || | || | |||||||| || | Sbjct 114838 GATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAATAAGCTATACATCTCTG 114897 Query 33883 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 33942 |||| || ||||| || | | ||||| | ||||||| ||||||| || | || || | Sbjct 114898 AATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTCAATGATTTGTA 114957 Query 33943 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAA 34002 ||||| | |||| ||| ||||| ||| || ||| ||| | ||||||| Sbjct 114958 CTTCTTGAATGAATCTTTCAATCAAATTATCACCAACAATTGTATCTGATGAAGCAAAAA 115017 Query 34003 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 34062 | || | | |||| |||||||| |||||| |||| ||| || || ||||||| | | | Sbjct 115018 ATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGCTTCTTCCAATGAGTAA 115077 Query 34063 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 34122 |||| ||||||| ||| || ||||| |||||||| ||||| | | | ||||||| Sbjct 115078 TATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGATGCTACAGATTGTTTATACT 115137 Query 34123 TATTCCAGATGTC-----ATGATATTGGA 34146 | | ||| || || || |||||||| Sbjct 115138 TGTACCATATATCGGGGTATAATATTGGA 115166 Score = 159 bits (176), Expect = 4e-34 Identities = 915/1448 (63%), Gaps = 54/1448 (4%) Strand=Plus/Plus Query 62439 GGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62498 ||||| | || |||| ||| || |||||||| | ||| ||||| || ||||| |||| Sbjct 383211 GGTTCAATTGATTCATAATTGCCTAAAATTTGTGAAGTGGATGCGGTAGGCATTTGTGCA 383270 Query 62499 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTC 62558 | |||| | |||| || || ||| | ||||| | | ||| |||| ||||||| Sbjct 383271 ATTAATAGAGAGTTTCGAATTCCATATTTACTGATATCTTTTTTCAGATTATCCCAATCA 383330 Query 62559 CAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTG-GCGTA 62617 || | || ||| | ||| || | || || || ||| | | | Sbjct 383331 AGAAACTGGGAGGGTTGTTTATTCCATAGATCATACTGCAAAAAGCCCTTGCTGAGTGGA 383390 Query 62618 CGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTA- 62676 | | || | ||| | |||| |||| || || ||| |||| ||| || || || | Sbjct 383391 CTA-CCAATATAACTGGGATATTGTCCATCATTTCTAGCAAGTTCACAGCTTGCTTCAAG 383449 Query 62677 --ATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCT 62734 ||||| ||||| | |||||||| || |||||||| | | | ||| || Sbjct 383450 AGATGCA---TAATAGAGAGTTTCAAATATTTTCTTATTCAATTGGATAGATTCTTCACT 383506 Query 62735 ATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGAT 62794 || |||| ||||| | || || || ||||| || |||| || || || || Sbjct 383507 GCCATATGGTATTTTTAAAATCATGAATAGATCAGCTAAACCCTGAATTCCGATCCCAAT 383566 Query 62795 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 62854 |||||||| | | ||||| || | ||| | |||| || | ||||||||| ||||| || Sbjct 383567 AGGTCTATTTTTTTTATTTGAAAATTCTGTAGCTGGGATTGTATAATAATTCATATCGAT 383626 Query 62855 AATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62914 | |||||| |||||| || ||||| || | ||| ||| ||||||||| Sbjct 383627 TAATTTATTTAGATTTTGTGTAACAACTTTTGTAACCTGTCTCAATTTATAAAAATCAAA 383686 Query 62915 TCGCCCATCTAT------TACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGC 62968 | ||| | || ||| | || | ||| | || || |||||||| || || Sbjct 383687 TACATTATCATTGGGAACTATAAATTTATTAACTGCTATGGAAGCAAGATTACAGACTGC 383746 Query 62969 TACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATA 63026 | |||| | || | | |||||| || ||||| || | ||||| || || || Sbjct 383747 AATTTCATCTTTTGAT--GAAAATTGTACAATTTCAGTACATAAGTTACTGCATTTTATG 383804 Query 63027 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 63086 ||||| ||||| ||| ||| |||| | ||| ||||||| | | || || | Sbjct 383805 GTTCCCAAATTAATTTGGTTAGACTTTCTATTAATACTATCCTTAAATAACAT--ATAGG 383862 Query 63087 GTA--CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA---CTCGAGCCTTTA 63141 ||| ||||||||||| ||| || || || |||| || | ||| || | || Sbjct 383863 GTAATCCAGTTTCAATTTGACTATCAATTAT---TTTCATGAACAATTCTCTTGCATCTA 383919 Query 63142 TTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTC 63201 || |||||| ||||| ||| ||| | ||| | | ||| ||||| | | Sbjct 383920 TTTGTTCCAAATATCTCTTTTCTTGTTCATATTGTCCATATAGTAATTCAAACTCATTAC 383979 Query 63202 CCCAAACAT-TGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 63260 ||||||| | || || | ||||||| || |||||||| || ||| | | | | Sbjct 383980 CCCAAACGTCTGATAGAT-TTGGACATTGATTTGGACACATTAAACTCCAAATTTCATTA 384038 Query 63261 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGT 63319 | | ||| | |||||| ||||||| | ||||||| | ||| |||| |||||||| Sbjct 384039 TTTTCCACCCTAGACATAAATAGATCAGACAACCAAAGA-CCATAGAATAAATCTCTTGC 384097 Query 63320 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63379 |||| |||| || || || |||| ||||| | || | || || ||||||| ||| Sbjct 384098 TCTAAGTTCATCATTGCCAATATTTTTTTTCAAATTCAAAAATTTCAAAATATCAATATG 384157 Query 63380 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63439 ||| | || || || || || || | || || || || ||||||||||| | | Sbjct 384158 CCATGACTCTAAATAGATTGCAATGGCCCCTGGTCG---CTTCCCTCCCTGATCAACCAA 384214 Query 63440 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63499 ||| | | | ||||| | | | | | | ||| | ||| ||||| | ||| | | Sbjct 384215 TCTCACAGAGCTATTAAATAAACGAATTGTAGAAATTAGACCATTTGAAACCCCA-GGAT 384273 Query 63500 ACCGGAGATATAGCCTCCACTG--GCACGAATATTACTAATTGATAGACCTATTCCCCCT 63557 | | | || | | ||| || ||| | | | || ||| ||||| || Sbjct 384274 A----AATTTTATCATTATCTGTTGCTTTGATACAATGTAAAGCTAAACCAATTCCACCC 384329 Query 63558 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCA 63617 ||| ||||| ||||| || || ||| | || ||||| || || || |||| Sbjct 384330 ATCATATTAGATATTAAAGCACAATTTTTGAGTGTATCATAAATATTGTCAATTGAATCA 384389 Query 63618 TCGATC--ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAA 63675 | || | ||||| || |||||| || | || ||| || | | ||| | ||||| | Sbjct 384390 -CTTTCCAAAGTTAA-TAAAAAACAACTTGCCAATTGCTGCTGTGGAGTACATGCATTTA 384447 Query 63676 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63735 || ||||||| || || || | |||||| || || |||| || || || | Sbjct 384448 TTAGTGTAGGAGTTGCATGAGTGTAATATTTTTGTGATAGAAGATCATAGGTTTCTCTTA 384507 Query 63736 CTGAGTCTATA----TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63791 | ||| ||| | ||||| || | ||| | || | ||| ||||| || ||| Sbjct 384508 TTTTGTCAATATTGTTACCATT----TATACTTACCGATACTCTCATAAACATATGTTGA 384563 Query 63792 GGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 63851 |||||||||| ||| || | ||||||| | ||| ||| |||| || |||||| | Sbjct 384564 GGTCTTTCAATAATAACATTATCAATTTTCATTAGGTATGATGTTTCTAATGTTTTATAT 384623 Query 63852 CCAAAATA 63859 |||||||| Sbjct 384624 CCAAAATA 384631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629451061902240