Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq738 430 1e-115 seq2120 152 5e-32 >seq738 Length=407637 Score = 430 bits (476), Expect = 1e-115 Identities = 1226/1856 (66%), Gaps = 69/1856 (4%) Strand=Plus/Plus Query 36814 GATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAA 36873 || || | || |||||| | ||||||||||||||| || | || || ||||| ||| Sbjct 382833 GAAGCAGCTTGTGTTCTGAAATAATACATTCCAGTCTTCAATCCAGATTTCCATGTATAA 382892 Query 36874 AAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGA 36933 ||||| | | | |||| | | || || |||| ||| |||| ||| ||| || Sbjct 382893 AAATGAAGTGAGCATAATTTTTCATGCGTTGGTTTATTCATAAATATATTCAATGACTGC 382952 Query 36934 CTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATC 36993 |||||| ||||||| |||| || ||||| || | || || ||||| ||| Sbjct 382953 GATTGATCAATAAACGGTGCTCTATCAATAGCCATATCAACAAGTGTCTTCTGAGAAATC 383012 Query 36994 TCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTA---AATCTAAATGTTGAATA 37050 ||||| || ||| |||| || || | || | |||| | | || || |||||| Sbjct 383013 TCCCATACTGTTCTATAACATTTCTTCAGATAAGAAGGTATCGATTTTATATTTTGAATT 383072 Query 37051 GAACCATTATGTAACACAATTGTATTCTTT-ATGTCATTATTCCACATATTTCTACTT-- 37107 || ||||| | || |||| | || | | || | || |||||| | | | | Sbjct 383073 GATCCATTGTTCCTCATAATT-TCTTGTCTCATTTTATCATTCCAAAGCC--CAGCCTGA 383129 Query 37108 ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTT 37167 || | ||| ||| || | | ||||| || |||||| | |||||||| || |||| Sbjct 383130 ATCAAATCTTTCATTAAATATTTATTTATAATCTGAAACTGACCAGATAAAACCTGTCTT 383189 Query 37168 GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTA 37227 ||||| ||||| ||| ||||||||| || |||| ||| | ||| ||||| || || Sbjct 383190 GTATAAATATTTGAAGTTATTGGTTCAATTGATTCATAATTGCCTAAAATTTGTGAAGTG 383249 Query 37228 GATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTC 37287 ||||| ||||||||| |||| |||| || |||| | ||||| | || | || || Sbjct 383250 GATGCGGTAGGCATTTGTGCAATTAATAGAGAGTTTCGAATTCCATATTTACTGATA-TC 383308 Query 37288 TTTTTT-AGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAA-CCACATATCATATT 37345 |||||| || | || |||||| | ||| | ||||| |||| ||| | |||||| | Sbjct 383309 TTTTTTCAGATTATCCCAATCA-AGAAACTGGGAGGGTTGTTTATTCCATAGATCATACT 383367 Query 37346 GTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAG 37405 | | || || || || |||| | | |||| | ||| |||| | | || ||| Sbjct 383368 GCAAAAAGCCCTTGCTGAGTGGACTACCAATATAACTGGGATATTGTCCATCATTTCTAG 383427 Query 37406 CTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTA 37465 | ||||| || || | ||| || | |||||||| | ||||| || |||| |||| | Sbjct 383428 CAAGTTCACAGCTTGCTTCAAGAGATGCATAATAGAGAGTTTCAAATATTTTCTTATTCA 383487 Query 37466 ATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAAT-ATAAACACATCAGCCAAA 37524 || | | |||||| || | ||| || | ||| || || | |||||| ||| Sbjct 383488 ATTGGATAGATTCTTCACTGCCATATGG-TATTTTTAAAATCATGAATAGATCAGCTAAA 383546 Query 37525 CCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACT 37584 ||||||| ||||| || || ||||||| ||| ||||| || ||||| | || Sbjct 383547 CCCTGAATTCCGATCCCAATAGGTCTATTTTTTTTATTTGAAA------ATTCTGTAGCT 383600 Query 37585 GG------ATAATAATTGATATCTATTATTTTATTTAGATTTT---TAACTAGTATTTTC 37635 || ||||||||| ||||| |||| |||||||||||||| |||| | | || Sbjct 383601 GGGATTGTATAATAATTCATATCGATTAATTTATTTAGATTTTGTGTAACAACTTTT--- 383657 Query 37636 GTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATT---AAC---AAATTTACTC 37689 |||| |||||| || | || |||||| |||| ||| ||| ||||||| | Sbjct 383658 GTAACCTGTCTCAATTTATAAAAATCAAATACATTATCATTGGGAACTATAAATTTATTA 383717 Query 37690 AACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACT--AAATTGTATAA 37747 | | || || | |||||||| || |||| |||||||| || | |||||||| || Sbjct 383718 ACTGCTATGGAAGCAAGATTACAGACTGCAATTTCATCTT--TTGATGAAAATTGTACAA 383775 Query 37748 TCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTAT 37807 | || ||||| | ||||| || | || ||||||||||| |||| || || ||| ||| Sbjct 383776 TTTCAGTACATAAGTTACTGCATTTTATGGTTCCCAAATTAATTTGGTTAGACTTTCTAT 383835 Query 37808 TACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAG 37867 || | ||| ||| ||| ||||| || ||| ||| |||||| | || | Sbjct 383836 TAATACTATCCTTAAATAACATATAGGGTAATCCAGTTTCAATTTGA----CTATCAATT 383891 Query 37868 ATTTCCATAAAC----TTCTTGC-TTTA-ACGATCGCTTTAAtttttttCTTTGTTTCGT 37921 |||| ||| ||| |||||| | || | || || | ||||||| ||| | Sbjct 383892 ATTTTCATGAACAATTCTCTTGCATCTATTTGTTCCAAATATCTCTTTTCTT--GTTCAT 383949 Query 37922 ATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGC 37981 ||| | ||||| | | ||| ||||| ||||| || || ||| |||||||| Sbjct 383950 ATTGTCCATATAGTAATTCAAACTCATTACCCCAAACGTCTGATAGATTTGGACATTGAT 384009 Query 37982 ATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTA 38041 ||||||||||| | ||| ||||| ||||| || | |||||||| ||||| | Sbjct 384010 TTGGACACATTAAACTCCAAATTTCATTATTTTCCACCCTAGACATAAATAGATCAGACA 384069 Query 38042 CCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTA 38101 ||| | || ||||||||| | | |||| ||| || || || | ||| ||| | | Sbjct 384070 ACCAAAGACCATAGAATAAATCTCTTGCTCTAAGTTCATCATTGCCAATATTTTTTTTCA 384129 Query 38102 AGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTG 38161 | | | ||| | || |||||| ||||||| |||| ||| || | || || |||| Sbjct 384130 AATTCAAAAATTTCAAAATATCAATATGCCATGACTCTAAATAGATTGCAATGGCCCCTG 384189 Query 38162 GTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAG 38221 ||| || |||||||||| || |||| || | | ||||| ||| | | ||| Sbjct 384190 GTCGCTT---CCCTCCCTGATCAACCAATCTCACAGAGCTATTAAATAAACGAATTGTAG 384246 Query 38222 GTACTATACCATTAGATTTGCC-GTTTATACCGGATATATAAGTACCCTTAGCTCGTATA 38280 | || |||||| || || | || | | ||| | || | | ||| ||| Sbjct 384247 AAATTAGACCATTTGAAACCCCAGGATAAA----TTTTATCATTATCTGTTGCTTTGATA 384302 Query 38281 TTACTTATCGACAATCCTATTCCA-CCTGCATGTTTTGATATTAAAGCGCATTGTTTTAA 38339 | || | || || |||||| || ||| || ||||||||||| || | ||| | Sbjct 384303 CAATGTAAAGCTAAACCAATTCCACCCATCAT-ATTAGATATTAAAGCACAATTTTTGAG 384361 Query 38340 CGTATCAAATATACCTTCTATACTGTCATCCTTT--ATTGGTAGTATAAAACAACTAGAC 38397 |||||| | ||| || || ||| |||| | | || || ||||||||| | | Sbjct 384362 TGTATCATAAATATTGTCAATTGAATCA--CTTTCCAAAGTTAATAAAAAACAACTTGCC 384419 Query 38398 ATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTT 38457 | ||| || |||||| | || || | || |||||||| |||||| || | ||||| Sbjct 384420 AATTGCTGCTGTGGAGTACATGCATTTATTAGTGTAGGAGTTGCATGAGTGTAATATTTT 384479 Query 38458 TCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGA 38517 | || | | || ||| |||||| ||| | || |||| || | |||| || Sbjct 384480 TGTGATAGAAGATCATAGGTTTCTCTTATTTTGTCAATATTGTTACCATTTATACTTACC 384539 Query 38518 GATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGA 38577 ||||| ||||| | ||||||||| |||||||| || || ||||| ||| | ||| Sbjct 384540 GATACTCTCATAAACATATGTTGAGGTCTTTCAATAATAACATTATCAATTTTCATTAGG 384599 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 || ||| ||||||||||||| ||||||||| || || |||||||||||| || Sbjct 384600 TATGATGTTTCTAATGTTTTATATCCAAAATATGTAAATTCATAATCTCTATCATA 384655 Score = 288 bits (318), Expect = 9e-73 Identities = 604/884 (68%), Gaps = 30/884 (3%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||||||||| || | ||| || ||||| |||||| | ||| |||| Sbjct 114300 TTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATCAATGAAATATTA 114359 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| || |||||||||| |||||| | | ||| | | || | || ||||| Sbjct 114360 TCCATGAAATCCAAAGGATTATGAACATTGTAAATCTTTGAATATCCAAGTTCAATTAAT 114419 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || ||| |||||| | | ||| | | ||||||| ||||| || Sbjct 114420 AATCTATCAGCAACAAATCTTATATAATTAATCATAGATGAGCAATTCAAACCTAAAATT 114479 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 || || || | | |||||| ||| || ||| |||| ||| || || ||||| Sbjct 114480 TCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGTATTATT 114539 Query 11579 GACGTTATAACTTCC--TTAGATGGTGGATGTAATAAATGTTT---AAACATTAAACACG 11633 || || | ||| | |||| | |||| ||||| ||| | | | | ||| | Sbjct 114540 GAA--TAAACCTTTGAATCAGATAATTTATGTTTTAAATATTTCCTATATAAGAGACATG 114597 Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693 |||| ||||||||||| | || ||||||||||| ||||||||| || ||||| || | Sbjct 114598 CAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAAGTTAAACCTG 114657 Query 11694 GCATCAATCCT-CGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 |||| ||| | || ||||| | ||||||||| || ||||| ||||| ||||| || Sbjct 114658 GCAT-AATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCAGAGAAGAAAATC 114716 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCT---TGTTGCT-AGATAT 11808 || || || ||||||| ||||| | || ||| | | || | | ||| | | |||| Sbjct 114717 CCTTCAACCACTGCAAACGCTACCAATCGCTCTGC-GAAACTTGAATTTTGATCATATAT 114775 Query 11809 CCATTTTCTGGCCCA-ATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAA 11867 |||| | ||||| || |||| ||| ||| | || || ||||| ||||||| Sbjct 114776 ATATTTATTTGCCCATATTCCCTTT-TTTCTTATTGAAGGGATGGTCTCTATTGCGTTAA 114834 Query 11868 ATAAATGCATTTTT----TCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923 | | ||| ||| || ||| || ||| | | | || |||| |||||| |||||| Sbjct 114835 AAAGATG-ATTCTTCTGATCTGTAGATTCTATGA---AAGTTTCTAATAATAAGCTATAC 114890 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC--TG 11981 || |||||||| ||||||||||||| || |||||| | |||||| ||| || || || Sbjct 114891 ATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTCAATG 114950 Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 | ||||| || | |||||||| ||||| ||| ||||| ||| | Sbjct 114951 A--TTTGTACTTCTTGAATGAATCTTTCAATCAAATTATCACCAACAATTGTATCTGATG 115008 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCC 12101 | ||||||||||| || |||||| |||||| | |||||| ||| || | || | || Sbjct 115009 AAGCAAAAAATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGCTTCTTCC 115068 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 ||| | | ||| || |||| ||| || ||||| |||||||||| ||| || |||| Sbjct 115069 AATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGATGCTACAGATT 115128 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 |||||||| | | ||| ||||| | || ||||| | ||||| Sbjct 115129 GTTTATACTTGTACCATATATCGGGGTA--TAATATTGGAAATA 115170 >seq2120 Length=154726 Score = 152 bits (168), Expect = 5e-32 Identities = 253/360 (70%), Gaps = 14/360 (4%) Strand=Plus/Minus Query 11852 GTTTCTATAGCGTTAAATAAATGCATTTTT----TCTATATTATCTCTTACATATGTATC 11907 || ||||| |||||||| | ||| ||| || ||| || ||| | | | || || Sbjct 146121 GTCTCTATTGCGTTAAAAAGATG-ATTCTTCTGATCTGTAGATTCTATGAAA---GTTTC 146066 Query 11908 TATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA 11967 || |||||| |||||||| |||||||| ||||||||||||| || |||||| | ||||| Sbjct 146065 TAATAATAAGCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAA 146006 Query 11968 ACATCGTGCCTC--TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTT 12025 | ||| || || ||| ||||| || | |||||||| ||||| ||| Sbjct 146005 AAATCTAGCTTCAATGATT--TGTACTTCTTGAATGAATCTTTCAATCAAATTATCACCA 145948 Query 12026 ACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCT 12085 ||||| ||| || ||||||||||| || |||||| |||||| | |||||| ||| Sbjct 145947 ACAATTGTATCTGATGAAGCAAAAAATGCAAGAATATGTGATATAAAATGTTTTTCATCT 145888 Query 12086 TTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAA 12145 || | || | ||||| | | ||| || |||| ||| || ||||| |||||| Sbjct 145887 GATGTCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAG 145828 Query 12146 AAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 ||| ||| || |||||||||||| | | ||| ||||| | || ||||| ||||||| Sbjct 145827 AAAGATGCTACAGATTGTTTATACTTGTACCATATATCGGGGTA--TAATATTGAAAATA 145770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468252130279520