Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq3617 109 5e-19 seq986 104 2e-17 >seq3617 Length=57851 Score = 109 bits (120), Expect = 5e-19 Identities = 197/283 (70%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 21054 CCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACG 21113 || |||||||||||||| ||||||||||||| ||| ||| |||| | ||||| Sbjct 12126 CCTAGGCCCATGTCGGCCGACCTCTGGTACATCTGACAGCTGAGCTGGTTGCCGGCCACA 12067 Query 21114 TAAAACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTT 21172 || ||||| ||| | || |||||| || || || |||||| | ||||| || ||| Sbjct 12066 TAGAACTG-CACGAGACAGTGACAGGGCGGCAGCGCCATCTTGGTTAGGTCGCTGGCGTT 12008 Query 21173 CCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAAT-TAGATCCACCACGT 21231 ||| |||||||| | |||||||| |||| || || | || | | | | |||| Sbjct 12007 CCATGCGCACATGATGATGCGCCTGTCGTCCGGATTGGTGGTGATCTTGGT-GATGACGT 11949 Query 21232 AACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCC 21291 |||||||||||| || ||||| | |||| || | || ||||||| || | Sbjct 11948 CACGCAGCTGGTCGACACCCTGCGACCTATAGTCGGTGAACATGTCCTTGTACTCGGCTC 11889 Query 21292 CAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 |||| || | |||||| || ||||| || || || || || || Sbjct 11888 CAAAGTGACGCCACTGAAAGCCGTAAACTGGGCCAAGGTCACC 11846 >seq986 Length=341358 Score = 104 bits (114), Expect = 2e-17 Identities = 196/283 (69%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 21054 CCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACG 21113 || |||||||||||||| ||||||||||||| ||| ||| |||| | ||||| Sbjct 236062 CCTAGGCCCATGTCGGCCGACCTCTGGTACATCTGACAGCTGAGCTGGTTGCCGGCCACA 236003 Query 21114 TAAAACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTT 21172 || ||||| ||| | || |||||| || || || |||||| | ||||| || ||| Sbjct 236002 TAGAACTG-CACGAGACAGTGACAGGGCGGCAGCGCCATCTTGGTTAGGTCGCTGGCGTT 235944 Query 21173 CCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAAT-TAGATCCACCACGT 21231 ||| |||||||| | |||||||| |||| || || | || | | | | |||| Sbjct 235943 CCATGCGCACATGATGATGCGCCTGTCGTCCGGATTGGTGGTGATCTTGGT-GATGACGT 235885 Query 21232 AACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCC 21291 ||||| |||||| || ||||| | |||| || | || ||||||| || | Sbjct 235884 CACGCAACTGGTCGACACCCTGCGACCTATAGTCGGTGAACATGTCCTTGTACTCGGCTC 235825 Query 21292 CAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 |||| || | |||||| || ||||| || || || || || || Sbjct 235824 CAAAGTGACGCCACTGAAAGCCGTAAACTGGGCCAAGGTCACC 235782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427533268935840