Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq3617 109 5e-19
seq986 104 2e-17
>seq3617
Length=57851
Score = 109 bits (120), Expect = 5e-19
Identities = 197/283 (70%), Gaps = 4/283 (1%)
Strand=Plus/Minus
Query 21054 CCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACG 21113
|| |||||||||||||| ||||||||||||| ||| ||| |||| | |||||
Sbjct 12126 CCTAGGCCCATGTCGGCCGACCTCTGGTACATCTGACAGCTGAGCTGGTTGCCGGCCACA 12067
Query 21114 TAAAACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTT 21172
|| ||||| ||| | || |||||| || || || |||||| | ||||| || |||
Sbjct 12066 TAGAACTG-CACGAGACAGTGACAGGGCGGCAGCGCCATCTTGGTTAGGTCGCTGGCGTT 12008
Query 21173 CCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAAT-TAGATCCACCACGT 21231
||| |||||||| | |||||||| |||| || || | || | | | | ||||
Sbjct 12007 CCATGCGCACATGATGATGCGCCTGTCGTCCGGATTGGTGGTGATCTTGGT-GATGACGT 11949
Query 21232 AACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCC 21291
|||||||||||| || ||||| | |||| || | || ||||||| || |
Sbjct 11948 CACGCAGCTGGTCGACACCCTGCGACCTATAGTCGGTGAACATGTCCTTGTACTCGGCTC 11889
Query 21292 CAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334
|||| || | |||||| || ||||| || || || || || ||
Sbjct 11888 CAAAGTGACGCCACTGAAAGCCGTAAACTGGGCCAAGGTCACC 11846
>seq986
Length=341358
Score = 104 bits (114), Expect = 2e-17
Identities = 196/283 (69%), Gaps = 4/283 (1%)
Strand=Plus/Minus
Query 21054 CCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACG 21113
|| |||||||||||||| ||||||||||||| ||| ||| |||| | |||||
Sbjct 236062 CCTAGGCCCATGTCGGCCGACCTCTGGTACATCTGACAGCTGAGCTGGTTGCCGGCCACA 236003
Query 21114 TAAAACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTT 21172
|| ||||| ||| | || |||||| || || || |||||| | ||||| || |||
Sbjct 236002 TAGAACTG-CACGAGACAGTGACAGGGCGGCAGCGCCATCTTGGTTAGGTCGCTGGCGTT 235944
Query 21173 CCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAAT-TAGATCCACCACGT 21231
||| |||||||| | |||||||| |||| || || | || | | | | ||||
Sbjct 235943 CCATGCGCACATGATGATGCGCCTGTCGTCCGGATTGGTGGTGATCTTGGT-GATGACGT 235885
Query 21232 AACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCC 21291
||||| |||||| || ||||| | |||| || | || ||||||| || |
Sbjct 235884 CACGCAACTGGTCGACACCCTGCGACCTATAGTCGGTGAACATGTCCTTGTACTCGGCTC 235825
Query 21292 CAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334
|||| || | |||||| || ||||| || || || || || ||
Sbjct 235824 CAAAGTGACGCCACTGAAAGCCGTAAACTGGGCCAAGGTCACC 235782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427533268935840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |