Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq738 291 8e-74
seq2120 113 4e-20
>seq738
Length=407637
Score = 291 bits (322), Expect = 8e-74
Identities = 613/890 (69%), Gaps = 43/890 (5%)
Strand=Plus/Plus
Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639
||||||||||||||| || || ||||||||||| || || ||| || ||| |||||
Sbjct 114299 TTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATCAATGAAATATT 114358
Query 13640 TTCCATAAAATCAAATGGATTTATTGACATA--AACACTTTATCACAACCTAGTTCTAAT 13697
||||| ||||| || ||||| || |||| || |||| | | || ||||| | |
Sbjct 114359 ATCCATGAAATCCAAAGGATT-ATGAACATTGTAAATCTTTGA-ATATCCAAGTTCAATT 114416
Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA-CAATTCATACCTAT 13756
| |||||||||||||| ||| ||||| | | ||| | || | ||||||| |||||
Sbjct 114417 AATAATCTATCAGCAACAAATCTTATATAATTAATCAT-AGATGAGCAATTCAAACCTAA 114475
Query 13757 TAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTAT 13816
| || || || | | | || | ||||||| ||| ||| || || || | |||
Sbjct 114476 AATTTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGTAT 114535
Query 13817 AATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT-------- 13868
|| || ||||| | || ||| || ||| |||| | |||||| |||
Sbjct 114536 TAT---TG-AATAAACC--TTTGAATCAG-ATAATTTATGT-TTTAAATATTTCCTATAT 114587
Query 13869 ---AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAA 13923
| ||| ||||| |||||||| | | ||||||||||||| |||||||| || |||||
Sbjct 114588 AAGAGACATGCAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAA 114647
Query 13924 ATGTTAATCCTGGCATCAATCCT-CGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982
||||| |||||||| ||| | || ||||| |||||||||||||| ||||| |||
Sbjct 114648 --GTTAAACCTGGCAT-AATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCA 114704
Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042
|| ||||| || || ||||| | |||||||||| ||||| ||| | || || |||
Sbjct 114705 GAGAAGAAAATCCCTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTGAATTT 114764
Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102
| | |||| |||| | |||||| |||||| | || || || || ||
Sbjct 114765 TGATCATATATATATTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGATGGTCTCT 114824
Query 14103 ATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATC-AATAAGTAA 14161
|| || ||||| | || | ||||| | ||| | ||| | || || ||||| |||
Sbjct 114825 ATTGCGTTAAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAA-TAA 114883
Query 14162 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGC 14221
||||||||| || || ||||| |||||||||| || ||||||| || || |||||||
Sbjct 114884 GCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGC 114943
Query 14222 TTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280
||| ||||||||| || | |||||||| |||||| ||| ||| || ||
Sbjct 114944 TTCAATGATTTGTACTTCTTGAAT-GAATCTTTCAATCAAATTATCACCAACAATTGTAT 115002
Query 14281 CACTAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTG-- 14336
| | ||||||||||| ||||||| | ||||| | || || || || ||
Sbjct 115003 CTGATGAAGCAAAAAATGCAAGAATATGTGAT--ATAAAATGTTTTTCATC--TGATGTC 115058
Query 14337 AGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14396
|| || ||||||| | | ||||||||| ||||| || || || |||||||||
Sbjct 115059 AGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGAT 115118
Query 14397 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446
|| |||| || ||||||| | |||||| || |||||||| |||||
Sbjct 115119 GCTACAGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGGAAA 115168
>seq2120
Length=154726
Score = 113 bits (124), Expect = 4e-20
Identities = 209/299 (70%), Gaps = 11/299 (4%)
Strand=Plus/Minus
Query 14153 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14212
||||| |||||||||||| || || ||||| |||||||||| || ||||||| || ||
Sbjct 146064 AATAA-TAAGCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAA 146006
Query 14213 GCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAA 14271
|||||||||| ||||||||| || | || |||||| |||||| ||| ||
Sbjct 146005 AAATCTAGCTTCAATGATTTGTACTTCTTGAATGAA-TCTTTCAATCAAATTATCACCAA 145947
Query 14272 CTATACCATCACTAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTC 14329
| || ||| | ||||||||||| ||||||| | ||||| | || || ||
Sbjct 145946 CAATTGTATCTGATGAAGCAAAAAATGCAAGAATATGTGAT--ATAAAATGTTTTTCATC 145889
Query 14330 ATTGTTG--AGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTC 14387
|| || || || ||||||| | | ||||||||| ||||| || || || |||
Sbjct 145888 --TGATGTCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTC 145831
Query 14388 CAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446
|| ||| || |||| || ||||||| | |||||| || |||||||| | |||
Sbjct 145830 CAGAAAGATGCTACAGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGAAAA 145772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479448810297200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |