Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq738 291 8e-74 seq2120 113 4e-20 >seq738 Length=407637 Score = 291 bits (322), Expect = 8e-74 Identities = 613/890 (69%), Gaps = 43/890 (5%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||||||||||||||| || || ||||||||||| || || ||| || ||| ||||| Sbjct 114299 TTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATCAATGAAATATT 114358 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATA--AACACTTTATCACAACCTAGTTCTAAT 13697 ||||| ||||| || ||||| || |||| || |||| | | || ||||| | | Sbjct 114359 ATCCATGAAATCCAAAGGATT-ATGAACATTGTAAATCTTTGA-ATATCCAAGTTCAATT 114416 Query 13698 AGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA-CAATTCATACCTAT 13756 | |||||||||||||| ||| ||||| | | ||| | || | ||||||| ||||| Sbjct 114417 AATAATCTATCAGCAACAAATCTTATATAATTAATCAT-AGATGAGCAATTCAAACCTAA 114475 Query 13757 TAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTAT 13816 | || || || | | | || | ||||||| ||| ||| || || || | ||| Sbjct 114476 AATTTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGTAT 114535 Query 13817 AATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT-------- 13868 || || ||||| | || ||| || ||| |||| | |||||| ||| Sbjct 114536 TAT---TG-AATAAACC--TTTGAATCAG-ATAATTTATGT-TTTAAATATTTCCTATAT 114587 Query 13869 ---AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAA 13923 | ||| ||||| |||||||| | | ||||||||||||| |||||||| || ||||| Sbjct 114588 AAGAGACATGCAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAA 114647 Query 13924 ATGTTAATCCTGGCATCAATCCT-CGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 ||||| |||||||| ||| | || ||||| |||||||||||||| ||||| ||| Sbjct 114648 --GTTAAACCTGGCAT-AATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCA 114704 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 || ||||| || || ||||| | |||||||||| ||||| ||| | || || ||| Sbjct 114705 GAGAAGAAAATCCCTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTGAATTT 114764 Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102 | | |||| |||| | |||||| |||||| | || || || || || Sbjct 114765 TGATCATATATATATTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGATGGTCTCT 114824 Query 14103 ATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATC-AATAAGTAA 14161 || || ||||| | || | ||||| | ||| | ||| | || || ||||| ||| Sbjct 114825 ATTGCGTTAAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAA-TAA 114883 Query 14162 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGC 14221 ||||||||| || || ||||| |||||||||| || ||||||| || || ||||||| Sbjct 114884 GCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGC 114943 Query 14222 TTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280 ||| ||||||||| || | |||||||| |||||| ||| ||| || || Sbjct 114944 TTCAATGATTTGTACTTCTTGAAT-GAATCTTTCAATCAAATTATCACCAACAATTGTAT 115002 Query 14281 CACTAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTG-- 14336 | | ||||||||||| ||||||| | ||||| | || || || || || Sbjct 115003 CTGATGAAGCAAAAAATGCAAGAATATGTGAT--ATAAAATGTTTTTCATC--TGATGTC 115058 Query 14337 AGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14396 || || ||||||| | | ||||||||| ||||| || || || ||||||||| Sbjct 115059 AGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGAT 115118 Query 14397 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446 || |||| || ||||||| | |||||| || |||||||| ||||| Sbjct 115119 GCTACAGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGGAAA 115168 >seq2120 Length=154726 Score = 113 bits (124), Expect = 4e-20 Identities = 209/299 (70%), Gaps = 11/299 (4%) Strand=Plus/Minus Query 14153 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14212 ||||| |||||||||||| || || ||||| |||||||||| || ||||||| || || Sbjct 146064 AATAA-TAAGCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAA 146006 Query 14213 GCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAA 14271 |||||||||| ||||||||| || | || |||||| |||||| ||| || Sbjct 146005 AAATCTAGCTTCAATGATTTGTACTTCTTGAATGAA-TCTTTCAATCAAATTATCACCAA 145947 Query 14272 CTATACCATCACTAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTC 14329 | || ||| | ||||||||||| ||||||| | ||||| | || || || Sbjct 145946 CAATTGTATCTGATGAAGCAAAAAATGCAAGAATATGTGAT--ATAAAATGTTTTTCATC 145889 Query 14330 ATTGTTG--AGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTC 14387 || || || || ||||||| | | ||||||||| ||||| || || || ||| Sbjct 145888 --TGATGTCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTC 145831 Query 14388 CAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14446 || ||| || |||| || ||||||| | |||||| || |||||||| | ||| Sbjct 145830 CAGAAAGATGCTACAGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGAAAA 145772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479448810297200