Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq738 277 2e-69 seq2120 114 1e-20 >seq738 Length=407637 Score = 277 bits (306), Expect = 2e-69 Identities = 611/892 (68%), Gaps = 47/892 (5%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||||||||||||||| || || |||||||| || || || ||| || ||| ||||| Sbjct 114299 TTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATCAATGAAATATT 114358 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATA--AACACTTTATCACAACCTAGTTCTAAT 13485 ||||| ||||| || ||||| | |||| || |||| | | || ||||| | | Sbjct 114359 ATCCATGAAATCCAAAGGATTA-TGAACATTGTAAATCTTTGA-ATATCCAAGTTCAATT 114416 Query 13486 AATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA-CAATTCATACCTAT 13544 |||||||||||||||| ||| ||||| | | ||| | || | ||||||| ||||| Sbjct 114417 AATAATCTATCAGCAACAAATCTTATATAATTAATCAT-AGATGAGCAATTCAAACCTAA 114475 Query 13545 TAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTAT 13604 | || || || | | | || | ||||||| ||| ||| || || || | ||| Sbjct 114476 AATTTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGTAT 114535 Query 13605 AATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT-------- 13656 || | ||||| | || ||| || ||| |||| | |||||| ||| Sbjct 114536 TAT----TGAATAAA--CCTTTGAATCAG-ATAATTTATGT-TTTAAATATTTCCTATAT 114587 Query 13657 ---AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAA 13711 | ||| ||||| |||||||| | | ||||||||||||| |||||||| || ||||| Sbjct 114588 AAGAGACATGCAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAA 114647 Query 13712 ATGTTAATCCTGGCATCAATCCT-CGtttttttAACCAAAATATTGCAGCGAATGATCCG 13770 ||||| |||||||| ||| | || ||||| |||||||||||||| || || || Sbjct 114648 --GTTAAACCTGGCAT-AATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCA 114704 Query 13771 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTT 13830 || ||||| || || ||||| | |||||||||| | ||| ||| | || || ||| Sbjct 114705 GAGAAGAAAATCCCTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTGAATTT 114764 Query 13831 TTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890 | | |||| |||| | |||||| |||||| | || || || || || Sbjct 114765 TGATCATATATATATTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGATGGTCTCT 114824 Query 13891 ATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATC-AATAAGTAA 13949 ||||| || || | ||| | ||||| | ||| | ||| | || || ||||| ||| Sbjct 114825 ATTGCGTTAAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAA-TAA 114883 Query 13950 GCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGC 14009 ||||||||| || || ||||| ||||| |||| || ||||||| || ||| ||||||| Sbjct 114884 GCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGC 114943 Query 14010 TTC--TGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACC 14066 ||| ||| |||||| || || | |||||||| ||| || ||| |||||| Sbjct 114944 TTCAATGA--TTTGTACTTCTTGAAT-GAATCTTTCAATCAAATTATCACCAACAATTGT 115000 Query 14067 ATCACTAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTG 14124 ||| | ||||||||||| ||||||| | ||||| | || || || || || Sbjct 115001 ATCTGATGAAGCAAAAAATGCAAGAATATGTGAT--ATAAAATGTTTTTCATC--TGATG 115056 Query 14125 --AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14182 || || ||||||| | | ||||||||| ||||| || || || ||||||||| Sbjct 115057 TCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAG 115116 Query 14183 TAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14234 || |||| || ||||||| | |||||| || |||||||| ||||| Sbjct 115117 ATGCTACAGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGGAAA 115168 >seq2120 Length=154726 Score = 114 bits (126), Expect = 1e-20 Identities = 247/358 (69%), Gaps = 16/358 (4%) Strand=Plus/Minus Query 13885 GTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATC-AAT 13943 || || ||||| || || | ||| | ||||| | ||| | ||| | || || ||| Sbjct 146121 GTCTCTATTGCGTTAAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAAT 146062 Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 || |||||||||||| || || ||||| ||||| |||| || ||||||| || ||| | Sbjct 146061 AA-TAAGCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAA 146003 Query 14004 TCTAGCTTC--TGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAAC 14060 ||||||||| ||| |||||| || || | |||||||| ||| || ||| ||| Sbjct 146002 TCTAGCTTCAATGA--TTTGTACTTCTTGAAT-GAATCTTTCAATCAAATTATCACCAAC 145946 Query 14061 AATACCATCACTAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCA 14118 ||| ||| | ||||||||||| ||||||| | ||||| | || || || Sbjct 145945 AATTGTATCTGATGAAGCAAAAAATGCAAGAATATGTGAT--ATAAAATGTTTTTCATC- 145889 Query 14119 TTGTTG--AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCC 14176 || || || || ||||||| | | ||||||||| ||||| || || || |||| Sbjct 145888 -TGATGTCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCC 145830 Query 14177 AAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14234 | ||| || |||| || ||||||| | |||||| || |||||||| | ||| Sbjct 145829 AGAAAGATGCTACAGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGAAAA 145772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478310273283120