Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq738 277 2e-69
seq2120 114 1e-20
>seq738
Length=407637
Score = 277 bits (306), Expect = 2e-69
Identities = 611/892 (68%), Gaps = 47/892 (5%)
Strand=Plus/Plus
Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427
||||||||||||||| || || |||||||| || || || ||| || ||| |||||
Sbjct 114299 TTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATCAATGAAATATT 114358
Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATA--AACACTTTATCACAACCTAGTTCTAAT 13485
||||| ||||| || ||||| | |||| || |||| | | || ||||| | |
Sbjct 114359 ATCCATGAAATCCAAAGGATTA-TGAACATTGTAAATCTTTGA-ATATCCAAGTTCAATT 114416
Query 13486 AATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA-CAATTCATACCTAT 13544
|||||||||||||||| ||| ||||| | | ||| | || | ||||||| |||||
Sbjct 114417 AATAATCTATCAGCAACAAATCTTATATAATTAATCAT-AGATGAGCAATTCAAACCTAA 114475
Query 13545 TAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTAT 13604
| || || || | | | || | ||||||| ||| ||| || || || | |||
Sbjct 114476 AATTTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGTAT 114535
Query 13605 AATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT-------- 13656
|| | ||||| | || ||| || ||| |||| | |||||| |||
Sbjct 114536 TAT----TGAATAAA--CCTTTGAATCAG-ATAATTTATGT-TTTAAATATTTCCTATAT 114587
Query 13657 ---AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAA 13711
| ||| ||||| |||||||| | | ||||||||||||| |||||||| || |||||
Sbjct 114588 AAGAGACATGCAAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAA 114647
Query 13712 ATGTTAATCCTGGCATCAATCCT-CGtttttttAACCAAAATATTGCAGCGAATGATCCG 13770
||||| |||||||| ||| | || ||||| |||||||||||||| || || ||
Sbjct 114648 --GTTAAACCTGGCAT-AATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCA 114704
Query 13771 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTT 13830
|| ||||| || || ||||| | |||||||||| | ||| ||| | || || |||
Sbjct 114705 GAGAAGAAAATCCCTTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTGAATTT 114764
Query 13831 TTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890
| | |||| |||| | |||||| |||||| | || || || || ||
Sbjct 114765 TGATCATATATATATTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGATGGTCTCT 114824
Query 13891 ATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATC-AATAAGTAA 13949
||||| || || | ||| | ||||| | ||| | ||| | || || ||||| |||
Sbjct 114825 ATTGCGTTAAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAA-TAA 114883
Query 13950 GCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGC 14009
||||||||| || || ||||| ||||| |||| || ||||||| || ||| |||||||
Sbjct 114884 GCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGC 114943
Query 14010 TTC--TGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACC 14066
||| ||| |||||| || || | |||||||| ||| || ||| ||||||
Sbjct 114944 TTCAATGA--TTTGTACTTCTTGAAT-GAATCTTTCAATCAAATTATCACCAACAATTGT 115000
Query 14067 ATCACTAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTG 14124
||| | ||||||||||| ||||||| | ||||| | || || || || ||
Sbjct 115001 ATCTGATGAAGCAAAAAATGCAAGAATATGTGAT--ATAAAATGTTTTTCATC--TGATG 115056
Query 14125 --AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14182
|| || ||||||| | | ||||||||| ||||| || || || |||||||||
Sbjct 115057 TCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAG 115116
Query 14183 TAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14234
|| |||| || ||||||| | |||||| || |||||||| |||||
Sbjct 115117 ATGCTACAGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGGAAA 115168
>seq2120
Length=154726
Score = 114 bits (126), Expect = 1e-20
Identities = 247/358 (69%), Gaps = 16/358 (4%)
Strand=Plus/Minus
Query 13885 GTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATC-AAT 13943
|| || ||||| || || | ||| | ||||| | ||| | ||| | || || |||
Sbjct 146121 GTCTCTATTGCGTTAAAAAGATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAAT 146062
Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003
|| |||||||||||| || || ||||| ||||| |||| || ||||||| || ||| |
Sbjct 146061 AA-TAAGCTATACATCTCTGAATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAA 146003
Query 14004 TCTAGCTTC--TGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAAC 14060
||||||||| ||| |||||| || || | |||||||| ||| || ||| |||
Sbjct 146002 TCTAGCTTCAATGA--TTTGTACTTCTTGAAT-GAATCTTTCAATCAAATTATCACCAAC 145946
Query 14061 AATACCATCACTAGCTGCAAAAAATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCA 14118
||| ||| | ||||||||||| ||||||| | ||||| | || || ||
Sbjct 145945 AATTGTATCTGATGAAGCAAAAAATGCAAGAATATGTGAT--ATAAAATGTTTTTCATC- 145889
Query 14119 TTGTTG--AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCC 14176
|| || || || ||||||| | | ||||||||| ||||| || || || ||||
Sbjct 145888 -TGATGTCAGCTTCTTCCAATGAGTAATATCCTTAGATAGATCGACCTCTTCTGTGGTCC 145830
Query 14177 AAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14234
| ||| || |||| || ||||||| | |||||| || |||||||| | |||
Sbjct 145829 AGAAAGATGCTACAGATTGTTTATACTTGTACCATATATCGGGGTATAATATTGAAAA 145772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478310273283120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |