Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1979 84.2 2e-11 seq1095 82.4 6e-11 >seq1979 Length=171087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| ||||| || | ||| | ||| | || |||||| || | ||||| |||||| Sbjct 87733 CCTCCGCGCAGCCTGAGCACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAC 87792 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || ||| |||| |||| || |||||||| || ||||| ||||||||||||| ||| Sbjct 87793 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGTTGATCGGGCGG 87851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| ||||| || | ||| | ||| | || |||||| || | ||||| |||||| Sbjct 152538 CCTCCGCGCAGCCTGAGCACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAC 152597 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || ||| |||| |||| || |||||||| || ||||| ||||||||||||| ||| Sbjct 152598 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGTTGATCGGGCGG 152656 >seq1095 Length=312686 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||||| || | |||||| |||| |||| |||||| || | ||||| || ||| Sbjct 84693 CCTCCACGCAACCTCAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 84634 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || || | || || |||||||| || | || ||| || |||| || Sbjct 84633 AGGGTTCTGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGTCTCTGCTGGTCGGGTGGA 84574 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| | ||| || Sbjct 84573 ATTCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCAATCGTGTCCGACGGCTCCACC 84514 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | ||| || || || ||||| | ||||||||||| || |||||||| Sbjct 84513 TCCAACGTAATTGTCTTGCCGGTCAACGTTTTCACAAAGATCTGCATTTT 84464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381153201116364