Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq738 248 1e-60 >seq738 Length=407637 Score = 248 bits (274), Expect = 1e-60 Identities = 582/875 (67%), Gaps = 10/875 (1%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 |||||| ||||||| ||| | ||||| || ||||| ||||| |||||| ||||| Sbjct 114299 TTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATCAATGAAATATT 114358 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||||||||| || ||||| |||||| ||||| ||| | |||| | |||| | Sbjct 114359 ATCCATGAAATCCAAAGGATTATGAACATTGTAAATCTTTGAATATCCAAGTTCAATTAA 114418 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 |||||||| || | ||| |||||| | |||| | ||||||| |||| || Sbjct 114419 TAATCTATCAGCAACAAATCTTATATAATTAATCATAGATGAGCAATTCAAACCTAAAAT 114478 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 || ||| || | | | | || ||||||||| ||||||| || || || ||| || Sbjct 114479 TTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGTATTAT 114538 Query 42013 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTT---AAACATCAAACATGC 42069 || || || ||| | || ||||| ||| | | | | |||||| Sbjct 114539 TGAATAAACCTTTGAATCAGATAATTTATGTTTTAAATATTTCCTATATAAGAGACATGC 114598 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 || || || || | ||||||||||||| || | ||| || || || | || || Sbjct 114599 AAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAAGTTAAACCTGG 114658 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCC 42189 ||| | ||||||||| | ||||||||| | ||||| ||||| ||||| || || Sbjct 114659 CATAATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCAGAGAAGAAAATCCC 114718 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGTATCCA 42246 ||| || | ||||| || | | || |||| | ||| | | | |||| ||| | Sbjct 114719 TTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTGAATTTTGATCATATATATA 114778 Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 || | ||||| |||| ||| ||| |||| || || ||||| || ||||| || Sbjct 114779 TTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGATGGTCTCTATTGCGTTAAAAAG 114838 Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGA 42366 || || || | || || || | | || || | || | |||||||| ||||| Sbjct 114839 ATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAATAAGCTATACATCTCTGA 114898 Query 42367 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC 42426 ||| || ||||| || | | ||||| | ||||||| |||| || || | | ||||| Sbjct 114899 ATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTCAATGATTTGTAC 114958 Query 42427 TTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG--GCTGCAAAA 42484 |||| | |||| |||| ||||| || || ||| || ||| | |||||| Sbjct 114959 TTCTTGAATGAATCTTTCAATCAAATTATCACCAACAATT--GTATCTGATGAAGCAAAA 115016 Query 42485 AACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG 42544 || || | | |||| |||||||| |||||| || | ||| | || ||||||| | | Sbjct 115017 AATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGCTTCTTCCAATGAGTA 115076 Query 42545 ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATAC 42604 ||||| ||||||| ||| || |||||| |||||||| |||||| | | | ||||||| Sbjct 115077 ATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGATGCTACAGATTGTTTATAC 115136 Query 42605 ATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 | | ||| ||||| | ||| ||||| || || Sbjct 115137 TTGTACCATATATCGGGGTATAATATTGGAAATAT 115171 Score = 187 bits (206), Expect = 3e-42 Identities = 806/1253 (64%), Gaps = 60/1253 (5%) Strand=Plus/Plus Query 71392 TATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTT 71451 ||| |||| || ||| || |||||||| || || || | | | ||||||| | ||| Sbjct 383409 TATTGTCCATCATTTCTAGCAAGTTCACAGCTTGCTTCAAGAGATGCATAATAGAGAGTT 383468 Query 71452 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA 71511 || || || |||||||| | | | ||| || || |||| ||||| | Sbjct 383469 TCAAATATTTTCTTATTCAATTGGATAGATTCTTCACTGCCATATGGTATTTTTAAAATC 383528 Query 71512 ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAA 71571 || || || ||||| || |||| || || || |||||||| | | | ||||| ||| Sbjct 383529 ATGAATAGATCAGCTAAACCCTGAATTCCGATCCCAATAGGTCTATTTTTTTTATTTGAA 383588 Query 71572 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACT 71631 | ||| | |||| || | ||||||||| ||||| || | |||||| |||||| || | Sbjct 383589 AATTCTGTAGCTGGGATTGTATAATAATTCATATCGATTAATTTATTTAGATTT-TGTGT 383647 Query 71632 ATTA-CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTAT------TAC 71684 | | |||| || | | | ||| |||||||||| ||| | || Sbjct 383648 AACAACTTTTGTAACCTGTCTCAATTTATAAAAATCAAATACATTATCATTGGGAACTAT 383707 Query 71685 AAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCA 71742 ||| || | || | || || |||||||| || || | |||| | || | | Sbjct 383708 AAATTTATTAACTGCTATGGAAGCAAGATTACAGACTGCAATTTCATCTTTTGAT--GAA 383765 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||||| ||||||||| || | ||||| || || |||||||| ||||| ||| ||| Sbjct 383766 AATTGTACAATTTCAGTACATAAGTTACTGCATTTTATGGTTCCCAAATTAATTTGGTTA 383825 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 |||| | ||| ||||||| | | ||| | || ||||||||||| ||| Sbjct 383826 GACTTTCTATTAATACTATCCTTAAATAACATATAGGGTAATCCAGTTTCAATTTGACTA 383885 Query 71863 TCTATAATCGCTTTCCAGACGA---CTCGAGCCTTTATTATATTCTTGTATCTCTTTTCT 71919 || || || |||| || | ||| || | |||| | | |||||||||||| Sbjct 383886 TCAATTAT---TTTCATGAACAATTCTCTTGCATCTATTTGTTCCAAATATCTCTTTTCT 383942 Query 71920 CTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA--- 71976 ||| |||||| ||||| | ||| ||||| | |||||| | |||| || | Sbjct 383943 TGTTCATATTGTCCATATAGTAATTCAAACTCATTACCCCAAAC---GTCTGATAGATTT 383999 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036 ||||||| ||| |||||||| || ||| | ||| || | || | |||||| Sbjct 384000 GGACATTGATTTGGACACATTAAACTCCAAATTTCATTATTTTCCACCCTAGACATAAAT 384059 Query 72037 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 72095 ||||||| | ||||||| | ||| |||| |||||| | |||| | || || || || | Sbjct 384060 AGATCAGACAACCAAAGA-CCATAGAATAAATCTCTTGCTCTAAGTTCATCATTGCCAAT 384118 Query 72096 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 ||| ||||| | || | || || ||||||| |||||| | || || || || || Sbjct 384119 ATTTTTTTTCAAATTCAAAAATTTCAAAATATCAATATGCCATGACTCTAAATAGATTGC 384178 Query 72156 CATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 72215 || | || || || || ||||||||||| | |||| | | | ||||| | | Sbjct 384179 AATGGCCCCTGGTCG---CTTCCCTCCCTGATCAACCAATCTCACAGAGCTATTAAATAA 384235 Query 72216 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA---TATAGCTTCC 72272 | | | | ||| | |||||| || ||| || ||| | | || | | Sbjct 384236 ACGAATTGTAGAAATTAGACCATTTGA--AACC------CCAGGATAAATTTTATCATTA 384287 Query 72273 ACTG--GC-ACGA-ATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 72328 ||| || || | | || ||| | || ||| ||||| || ||| ||||| |||| Sbjct 384288 TCTGTTGCTTTGATACAATG-TAA-AGCTAAACCAATTCCACCCATCATATTAGATATTA 384345 Query 72329 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA---TCCATCATGTTAA 72385 | || || ||| | |||||||| || || || |||| |||| | ||||| Sbjct 384346 AAGCACAATTTTTGAGTGTATCATAAATATTGTCAATTGAATCACTTTCCA--AAGTTAA 384403 Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 || |||||| || | || ||| || | ||| | ||||| | || ||||||| | Sbjct 384404 -TAAAAAACAACTTGCCAATTGCTGCTGTGGAGTACATGCATTTATTAGTGTAGGAGTTG 384462 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA---- 72501 | || || | |||||| || || |||| || || || | | || ||| Sbjct 384463 CATGAGTGTAATATTTTTGTGATAGAAGATCATAGGTTTCTCTTATTTTGTCAATATTGT 384522 Query 72502 TCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATC 72561 | ||||| ||| | ||||| || | ||| |||||||| ||||||||||||| || Sbjct 384523 TACCATT----TATACTTACCGATACTCTCATAAACATATGTTGAGGTCTTTCAATAATA 384578 Query 72562 TTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 72614 |||| ||||||| | ||| ||| |||| || |||||| | |||||||| Sbjct 384579 ACATTATCAATTTTCATTAGGTATGATGTTTCTAATGTTTTATATCCAAAATA 384631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670748613764080