Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq738 248 1e-60
>seq738
Length=407637
Score = 248 bits (274), Expect = 1e-60
Identities = 582/875 (67%), Gaps = 10/875 (1%)
Strand=Plus/Plus
Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832
|||||| ||||||| ||| | ||||| || ||||| ||||| |||||| |||||
Sbjct 114299 TTTTTGATATTCACTCACCCTCTTTTCAAAGAAATTTGTCTTATTAATCAATGAAATATT 114358
Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892
||||||||||| || ||||| |||||| ||||| ||| | |||| | |||| |
Sbjct 114359 ATCCATGAAATCCAAAGGATTATGAACATTGTAAATCTTTGAATATCCAAGTTCAATTAA 114418
Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952
|||||||| || | ||| |||||| | |||| | ||||||| |||| ||
Sbjct 114419 TAATCTATCAGCAACAAATCTTATATAATTAATCATAGATGAGCAATTCAAACCTAAAAT 114478
Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012
|| ||| || | | | | || ||||||||| ||||||| || || || ||| ||
Sbjct 114479 TTCAACGGGTAATGACTCTGTCAGAAATTCTCCTTCAATATCAACTGCTTCCTGTATTAT 114538
Query 42013 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTT---AAACATCAAACATGC 42069
|| || || ||| | || ||||| ||| | | | | ||||||
Sbjct 114539 TGAATAAACCTTTGAATCAGATAATTTATGTTTTAAATATTTCCTATATAAGAGACATGC 114598
Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129
|| || || || | ||||||||||||| || | ||| || || || | || ||
Sbjct 114599 AAATTCACAATGTAAGGCCTCATCTCTACTTATAAGTTCATTACTGAAAGTTAAACCTGG 114658
Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCC 42189
||| | ||||||||| | ||||||||| | ||||| ||||| ||||| || ||
Sbjct 114659 CATAATATTACGCTTTTTCAACCAAAATATTGCTGCAAAACTCCCAGAGAAGAAAATCCC 114718
Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGTATCCA 42246
||| || | ||||| || | | || |||| | ||| | | | |||| ||| |
Sbjct 114719 TTCAACCACTGCAAACGCTACCAATCGCTCTGCGAAACTTGAATTTTGATCATATATATA 114778
Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306
|| | ||||| |||| ||| ||| |||| || || ||||| || ||||| ||
Sbjct 114779 TTTATTTGCCCATATTCCCTTTTTTCTTATTGAAGGGATGGTCTCTATTGCGTTAAAAAG 114838
Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGA 42366
|| || || | || || || | | || || | || | |||||||| |||||
Sbjct 114839 ATGATTCTTCTGATCTGTAGATTCTATGAAAGTTTCTAATAATAAGCTATACATCTCTGA 114898
Query 42367 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC 42426
||| || ||||| || | | ||||| | ||||||| |||| || || | | |||||
Sbjct 114899 ATGTATATTTTCCATAGTTAATTGAAAACTGTAGAAAAATCTAGCTTCAATGATTTGTAC 114958
Query 42427 TTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG--GCTGCAAAA 42484
|||| | |||| |||| ||||| || || ||| || ||| | ||||||
Sbjct 114959 TTCTTGAATGAATCTTTCAATCAAATTATCACCAACAATT--GTATCTGATGAAGCAAAA 115016
Query 42485 AACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG 42544
|| || | | |||| |||||||| |||||| || | ||| | || ||||||| | |
Sbjct 115017 AATGCAAGAATATGTGATATAAAATGTTTTTCATCTGATGTCAGCTTCTTCCAATGAGTA 115076
Query 42545 ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATAC 42604
||||| ||||||| ||| || |||||| |||||||| |||||| | | | |||||||
Sbjct 115077 ATATCCTTAGATAGATCGACCTCTTCTGTGGTCCAAAAAGATGCTACAGATTGTTTATAC 115136
Query 42605 ATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639
| | ||| ||||| | ||| ||||| || ||
Sbjct 115137 TTGTACCATATATCGGGGTATAATATTGGAAATAT 115171
Score = 187 bits (206), Expect = 3e-42
Identities = 806/1253 (64%), Gaps = 60/1253 (5%)
Strand=Plus/Plus
Query 71392 TATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTT 71451
||| |||| || ||| || |||||||| || || || | | | ||||||| | |||
Sbjct 383409 TATTGTCCATCATTTCTAGCAAGTTCACAGCTTGCTTCAAGAGATGCATAATAGAGAGTT 383468
Query 71452 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA 71511
|| || || |||||||| | | | ||| || || |||| ||||| |
Sbjct 383469 TCAAATATTTTCTTATTCAATTGGATAGATTCTTCACTGCCATATGGTATTTTTAAAATC 383528
Query 71512 ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAA 71571
|| || || ||||| || |||| || || || |||||||| | | | ||||| |||
Sbjct 383529 ATGAATAGATCAGCTAAACCCTGAATTCCGATCCCAATAGGTCTATTTTTTTTATTTGAA 383588
Query 71572 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACT 71631
| ||| | |||| || | ||||||||| ||||| || | |||||| |||||| || |
Sbjct 383589 AATTCTGTAGCTGGGATTGTATAATAATTCATATCGATTAATTTATTTAGATTT-TGTGT 383647
Query 71632 ATTA-CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTAT------TAC 71684
| | |||| || | | | ||| |||||||||| ||| | ||
Sbjct 383648 AACAACTTTTGTAACCTGTCTCAATTTATAAAAATCAAATACATTATCATTGGGAACTAT 383707
Query 71685 AAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCA 71742
||| || | || | || || |||||||| || || | |||| | || | |
Sbjct 383708 AAATTTATTAACTGCTATGGAAGCAAGATTACAGACTGCAATTTCATCTTTTGAT--GAA 383765
Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802
|||||| ||||||||| || | ||||| || || |||||||| ||||| ||| |||
Sbjct 383766 AATTGTACAATTTCAGTACATAAGTTACTGCATTTTATGGTTCCCAAATTAATTTGGTTA 383825
Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862
|||| | ||| ||||||| | | ||| | || ||||||||||| |||
Sbjct 383826 GACTTTCTATTAATACTATCCTTAAATAACATATAGGGTAATCCAGTTTCAATTTGACTA 383885
Query 71863 TCTATAATCGCTTTCCAGACGA---CTCGAGCCTTTATTATATTCTTGTATCTCTTTTCT 71919
|| || || |||| || | ||| || | |||| | | ||||||||||||
Sbjct 383886 TCAATTAT---TTTCATGAACAATTCTCTTGCATCTATTTGTTCCAAATATCTCTTTTCT 383942
Query 71920 CTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA--- 71976
||| |||||| ||||| | ||| ||||| | |||||| | |||| || |
Sbjct 383943 TGTTCATATTGTCCATATAGTAATTCAAACTCATTACCCCAAAC---GTCTGATAGATTT 383999
Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036
||||||| ||| |||||||| || ||| | ||| || | || | ||||||
Sbjct 384000 GGACATTGATTTGGACACATTAAACTCCAAATTTCATTATTTTCCACCCTAGACATAAAT 384059
Query 72037 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 72095
||||||| | ||||||| | ||| |||| |||||| | |||| | || || || || |
Sbjct 384060 AGATCAGACAACCAAAGA-CCATAGAATAAATCTCTTGCTCTAAGTTCATCATTGCCAAT 384118
Query 72096 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155
||| ||||| | || | || || ||||||| |||||| | || || || || ||
Sbjct 384119 ATTTTTTTTCAAATTCAAAAATTTCAAAATATCAATATGCCATGACTCTAAATAGATTGC 384178
Query 72156 CATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 72215
|| | || || || || ||||||||||| | |||| | | | ||||| | |
Sbjct 384179 AATGGCCCCTGGTCG---CTTCCCTCCCTGATCAACCAATCTCACAGAGCTATTAAATAA 384235
Query 72216 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA---TATAGCTTCC 72272
| | | | ||| | |||||| || ||| || ||| | | || | |
Sbjct 384236 ACGAATTGTAGAAATTAGACCATTTGA--AACC------CCAGGATAAATTTTATCATTA 384287
Query 72273 ACTG--GC-ACGA-ATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 72328
||| || || | | || ||| | || ||| ||||| || ||| ||||| ||||
Sbjct 384288 TCTGTTGCTTTGATACAATG-TAA-AGCTAAACCAATTCCACCCATCATATTAGATATTA 384345
Query 72329 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA---TCCATCATGTTAA 72385
| || || ||| | |||||||| || || || |||| |||| | |||||
Sbjct 384346 AAGCACAATTTTTGAGTGTATCATAAATATTGTCAATTGAATCACTTTCCA--AAGTTAA 384403
Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445
|| |||||| || | || ||| || | ||| | ||||| | || ||||||| |
Sbjct 384404 -TAAAAAACAACTTGCCAATTGCTGCTGTGGAGTACATGCATTTATTAGTGTAGGAGTTG 384462
Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA---- 72501
| || || | |||||| || || |||| || || || | | || |||
Sbjct 384463 CATGAGTGTAATATTTTTGTGATAGAAGATCATAGGTTTCTCTTATTTTGTCAATATTGT 384522
Query 72502 TCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATC 72561
| ||||| ||| | ||||| || | ||| |||||||| ||||||||||||| ||
Sbjct 384523 TACCATT----TATACTTACCGATACTCTCATAAACATATGTTGAGGTCTTTCAATAATA 384578
Query 72562 TTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 72614
|||| ||||||| | ||| ||| |||| || |||||| | ||||||||
Sbjct 384579 ACATTATCAATTTTCATTAGGTATGATGTTTCTAATGTTTTATATCCAAAATA 384631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670748613764080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |