Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1095 113 5e-20 >seq1095 Length=312686 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || || | |||||| || |||| || ||||| ||||| |||||||| || Sbjct 81815 CCTCCACGCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAA 81756 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || || || || ||| |||| ||||| ||||| || || || Sbjct 81755 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGG 81696 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || |||| | || | || || | ||||| ||| Sbjct 81695 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATAGTATCGGATGGTTCAACT 81636 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||||||||||| |||||||||||||| ||||| Sbjct 81635 TCCAAAGTGATGGTCTTGCCGGTCAGAGTTTTTACGAATATCTGCAT 81589 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || || | |||||| || |||| || ||||| ||||| |||||||| || Sbjct 88636 CCTCCACGCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAA 88577 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || || || || ||| |||| ||||| ||||| || || || Sbjct 88576 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGG 88517 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || |||| | || | || || | ||||| ||| Sbjct 88516 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATAGTATCGGATGGTTCAACT 88457 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||||||||||| |||||||||||||| ||||| Sbjct 88456 TCCAAAGTGATGGTCTTGCCGGTCAGAGTTTTTACGAATATCTGCAT 88410 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || | || | ||||||||||| || |||||||| || | Sbjct 89092 CCTCCACGAAGACGCAACACAAGGTGGAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAC 89033 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || || || || || ||||| | || ||||| ||||| ||||| || Sbjct 89032 AGTGTCCTTCCATCCTCCAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCGGGTGGG 88973 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| ||| || || | | || | |||||| | |||||| ||| Sbjct 88972 ATTCCCTCCTTGTCTTGAATCTTAGCCTTCACGTTCTCAATCGTGTCAGAGGGTTCAACT 88913 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || |||||||||| ||||||||||| |||||||| Sbjct 88912 TCCAATGTGATGGTTTTGCCGGTCAGAGTTTTTACGAAGATTTGCAT 88866 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || | || | || |||||||| || |||||||| || Sbjct 89320 CCTCCACGAAGACGCAACACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAT 89261 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| || || || ||||| |||| ||||| |||||||| ||||| Sbjct 89260 AGTGTTCTGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGA 89201 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | || |||||| Sbjct 89200 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATAGTGTCTGATGGCTCTACT 89141 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||||| || ||||| || |||||||| Sbjct 89140 TCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 89094 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || | || | || |||||||| || |||||||| || Sbjct 89548 CCTCCACGAAGACGCAACACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAT 89489 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| || || || ||||| |||| ||||| |||||||| ||||| Sbjct 89488 AGTGTTCTGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGA 89429 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | || |||||| Sbjct 89428 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATAGTGTCTGATGGCTCTACT 89369 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||||| || ||||| || |||||||| Sbjct 89368 TCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 89322 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || | || | || |||||||| || |||||||| || Sbjct 89776 CCTCCACGAAGACGCAACACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAT 89717 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| || || || ||||| |||| ||||| |||||||| ||||| Sbjct 89716 AGTGTTCTGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGA 89657 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | || |||||| Sbjct 89656 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATAGTGTCTGATGGCTCTACT 89597 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||||| || ||||| || |||||||| Sbjct 89596 TCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 89550 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || | || | || |||||||| || |||||||| || Sbjct 90004 CCTCCACGAAGACGCAACACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAT 89945 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| || || || ||||| |||| ||||| |||||||| ||||| Sbjct 89944 AGTGTTCTGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGA 89885 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | || |||||| Sbjct 89884 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATAGTGTCTGATGGCTCTACT 89825 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||||| || ||||| || |||||||| Sbjct 89824 TCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 89778 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || | || | || |||||||| || |||||||| || Sbjct 90232 CCTCCACGAAGACGCAACACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAT 90173 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| || || || ||||| |||| ||||| |||||||| ||||| Sbjct 90172 AGTGTTCTGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGA 90113 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | || |||||| Sbjct 90112 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATAGTGTCTGATGGCTCTACT 90053 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||||| || ||||| || |||||||| Sbjct 90052 TCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 90006 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || | || | || |||||||| || |||||||| || Sbjct 90460 CCTCCACGAAGACGCAACACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCTGAT 90401 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| || || || ||||| |||| ||||| |||||||| ||||| Sbjct 90400 AGTGTTCTGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGA 90341 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | || |||||| Sbjct 90340 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCGATAGTGTCTGATGGCTCTACT 90281 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||||| || ||||| || |||||||| Sbjct 90280 TCCAGGGTGATGGTCTTGCCGGTCAGAGTCTTTACAAAGATTTGCAT 90234 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||||| || | ||| | || |||||||| || || ||||| || Sbjct 81588 GCCACCACGGAGACGCAACACAAGATGGAGAGTGGATTCTTTCTGAATATTGTAGTCTGA 81529 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||| || || || || ||||||||||| | || || || ||||| || || || Sbjct 81528 CAATGTCCTGCCATCCTCCAGCTGTTTACCAGCGAAAATGAGGCGCTGCTGGTCAGGTGG 81469 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||| || || | | || | |||||| | ||| || || Sbjct 81468 GATTCCTTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATCGTGTCTGAGGGCTCCAC 81409 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || ||||| ||||| |||||||| |||||| Sbjct 81408 CTCCAATGTAATGGTCTTTCCTGTCAACGTTTTCACGAATATCTGCATA 81360 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||||| || | ||| | || |||||||| || || ||||| || Sbjct 88409 GCCACCACGGAGACGCAACACAAGATGGAGAGTGGATTCTTTCTGAATATTGTAGTCTGA 88350 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||| || || || || ||||||||||| | || || || ||||| || || || Sbjct 88349 CAATGTCCTGCCATCCTCCAGCTGTTTACCAGCGAAAATGAGGCGCTGCTGGTCAGGTGG 88290 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||| || || | | || | |||||| | ||| || || Sbjct 88289 GATTCCTTCCTTATCTTGAATCTTGGCCTTCACATTCTCAATCGTGTCTGAGGGCTCCAC 88230 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || ||||| ||||| |||||||| |||||| Sbjct 88229 CTCCAATGTAATGGTCTTTCCTGTCAACGTTTTCACGAATATCTGCATA 88181 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || || | ||||||||||||||| |||||||| || || || || || || Sbjct 90671 AACCAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAGTCAGACAGGGTTCTACCATCCTC 90612 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||| || ||||| |||| || | ||||| ||||| || || || || ||||| Sbjct 90611 CAGTTGCTTTCCAGCGAAGATAAGTCTCTGCTGGTCGGGTGGAATTCCCTCCTTGTCTTG 90552 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | ||| | || || | ||| || ||||| | || | ||||| Sbjct 90551 GATCTTGGCCTTCACGTTTTCAATGGTATCGGAGGGCTCCACTTCCAAGGTGATGGTCTT 90492 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| || ||||| || |||||||| Sbjct 90491 GCCGGTCAGAGTCTTTACAAAGATTTGCAT 90462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506719330294560