Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_004302.1
Length=33350
Score E
Sequences producing significant alignments: (Bits) Value
seq13052 360 4e-95
seq12081 114 3e-21
>seq13052
Length=1690
Score = 360 bits (398), Expect = 4e-95
Identities = 267/312 (86%), Gaps = 0/312 (0%)
Strand=Plus/Minus
Query 30021 AAGGGAGAATTCATGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCA 30080
|||||||| || || | |||||||||| || ||||||| | | ||| | || || |
Sbjct 1668 AAGGGAGAGTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCG 1609
Query 30081 AATTTAATACTTCTCAATGAAGATAAAGAACAAGTTATTGTCAGTAAGAATTTAGCATTC 30140
|| |||||||||||||||||||||||||| || ||||| ||||| ||||| | | ||
Sbjct 1608 AACTTAATACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTT 1549
Query 30141 ATATCAGATGATTCTACAGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGAT 30200
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 ATATCAGATAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGAT 1489
Query 30201 TTTACAAAATTATTATTGGAAAATATGCCACAAGTGATGCGTAGTGAGTTGAATGACTTA 30260
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1488 TTTACAAAATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTA 1429
Query 30261 CATGATCAAACCGATTCAAACAAGAGCAATATTGACCTTAAAGCAAATTTAGCTGATATG 30320
|||| |||||| || |||||||||||||||||||| |||||||| ||| | | || ||
Sbjct 1428 CATGCTCAAACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAATCAAACAGACTTG 1369
Query 30321 ACGAGCTTACAA 30332
| | |||||||
Sbjct 1368 AACAACTTACAA 1357
Score = 185 bits (204), Expect = 2e-42
Identities = 108/112 (96%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 30681 TTAATCACAAACAAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 30740
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 TTAATCACAAATCAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 1240
Query 30741 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCAAACAGTTTACCAC 30792
|||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1239 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTAACAC 1188
>seq12081
Length=2162
Score = 114 bits (126), Expect = 3e-21
Identities = 86/99 (87%), Gaps = 4/99 (4%)
Strand=Plus/Minus
Query 31726 CATGGGAAAATATCGGTTCAGCAGTGATTGGTTCAACGACAATATATTATTGGAAACGAA 31785
||||| ||||||||||||| | ||| ||||||||||| |||||||||||||||||||| |
Sbjct 1959 CATGGCAAAATATCGGTTCGGTAGTAATTGGTTCAACAACAATATATTATTGGAAACGCA 1900
Query 31786 CTGCATaaaaaataaaaaataggagaa-agaacatgaaa 31823
||||||||||||||||| |||| || | || ||||||
Sbjct 1899 CTGCATAAAAAATAAAA---AGGAAAATAAAAAATGAAA 1864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 106539464276352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |