Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_004302.1 Length=33350 Score E Sequences producing significant alignments: (Bits) Value seq13052 360 4e-95 seq12081 114 3e-21 >seq13052 Length=1690 Score = 360 bits (398), Expect = 4e-95 Identities = 267/312 (86%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 30021 AAGGGAGAATTCATGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCA 30080 |||||||| || || | |||||||||| || ||||||| | | ||| | || || | Sbjct 1668 AAGGGAGAGTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCG 1609 Query 30081 AATTTAATACTTCTCAATGAAGATAAAGAACAAGTTATTGTCAGTAAGAATTTAGCATTC 30140 || |||||||||||||||||||||||||| || ||||| ||||| ||||| | | || Sbjct 1608 AACTTAATACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTT 1549 Query 30141 ATATCAGATGATTCTACAGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGAT 30200 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1548 ATATCAGATAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGAT 1489 Query 30201 TTTACAAAATTATTATTGGAAAATATGCCACAAGTGATGCGTAGTGAGTTGAATGACTTA 30260 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1488 TTTACAAAATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTA 1429 Query 30261 CATGATCAAACCGATTCAAACAAGAGCAATATTGACCTTAAAGCAAATTTAGCTGATATG 30320 |||| |||||| || |||||||||||||||||||| |||||||| ||| | | || || Sbjct 1428 CATGCTCAAACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAATCAAACAGACTTG 1369 Query 30321 ACGAGCTTACAA 30332 | | ||||||| Sbjct 1368 AACAACTTACAA 1357 Score = 185 bits (204), Expect = 2e-42 Identities = 108/112 (96%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 30681 TTAATCACAAACAAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 30740 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1299 TTAATCACAAATCAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 1240 Query 30741 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCAAACAGTTTACCAC 30792 |||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 1239 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTAACAC 1188 >seq12081 Length=2162 Score = 114 bits (126), Expect = 3e-21 Identities = 86/99 (87%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 31726 CATGGGAAAATATCGGTTCAGCAGTGATTGGTTCAACGACAATATATTATTGGAAACGAA 31785 ||||| ||||||||||||| | ||| ||||||||||| |||||||||||||||||||| | Sbjct 1959 CATGGCAAAATATCGGTTCGGTAGTAATTGGTTCAACAACAATATATTATTGGAAACGCA 1900 Query 31786 CTGCATaaaaaataaaaaataggagaa-agaacatgaaa 31823 ||||||||||||||||| |||| || | || |||||| Sbjct 1899 CTGCATAAAAAATAAAA---AGGAAAATAAAAAATGAAA 1864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106539464276352